View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11940_low_16 (Length: 475)
Name: NF11940_low_16
Description: NF11940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11940_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 292; Significance: 1e-164; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 13 - 332
Target Start/End: Complemental strand, 23057937 - 23057619
Alignment:
| Q |
13 |
agatagaacaagcatcaaatgcttttaaacctccaacagaagatatgaacactatgcttccatatccagattcttttagaagtgggtatgctagttgaca |
112 |
Q |
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| T |
23057937 |
agatagaacaagcatcaaatgcttttaaacctccaacagaagatatgaacactatgcttccatatccagattcttttagaagtgggtatgctagttgaca |
23057838 |
T |
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| Q |
113 |
aagatggtaaccagactcaaaatttgtacccattgtagttactatatcttcagcagtatactcaagtattttcttatgtgtacatgtggcagcattgttt |
212 |
Q |
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| T |
23057837 |
aagatggtaaccagactcaaaatttgtacccattgtagttactatatcttcagcagtatactctagtattttcttatgtgtacatgtggcagcattgttt |
23057738 |
T |
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| Q |
213 |
acctaagaaataaatataaaaatacatcacttataaccgttgatttgactgaaaattagataaatgagagaattttaaaataataaccgaatatcagtcg |
312 |
Q |
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| T |
23057737 |
acctaacaaataaatataaaaatacatcacttataaccg-tgatttgactgaaaattagataaatgggagaattttaaaataataaccgaatttcagtcg |
23057639 |
T |
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| Q |
313 |
catatatgattgtttagaag |
332 |
Q |
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| T |
23057638 |
catatatgattgtttggaag |
23057619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 33 - 218
Target Start/End: Complemental strand, 23035394 - 23035209
Alignment:
| Q |
33 |
gcttttaaacctccaacagaagatatgaacactatgcttccatatccagattcttttagaagtgggtatgctagttgacaaagatggtaaccagactcaa |
132 |
Q |
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| T |
23035394 |
gcttttaaacctgcaacggaagaagtgaacactatgcttccatatccagattgttttagaagaggatgtgcaagttgacacaaatggtaaccagacacaa |
23035295 |
T |
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| Q |
133 |
aatttgtacccattgtagttactatatcttcagcagtatactcaagtattttcttatgtgtacatgtggcagcattgtttacctaa |
218 |
Q |
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| T |
23035294 |
aatttgtacccaatgtagtgtttatatcttcatcagtattatctattattttcttacttgtaggttttgcagcattgtttacctaa |
23035209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 33 - 218
Target Start/End: Complemental strand, 23026590 - 23026405
Alignment:
| Q |
33 |
gcttttaaacctccaacagaagatatgaacactatgcttccatatccagattcttttagaagtgggtatgctagttgacaaagatggtaaccagactcaa |
132 |
Q |
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|||||||||||| |||| ||||| ||||||||||||||||||||||||||| ||||||||| || | ||| |||||||| | ||||||||||||| ||| |
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| T |
23026590 |
gcttttaaacctgcaacggaagaagtgaacactatgcttccatatccagattgttttagaagaggatgtgcaagttgacacaaatggtaaccagacacaa |
23026491 |
T |
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| Q |
133 |
aatttgtacccattgtagttactatatcttcagcagtatactcaagtattttcttatgtgtacatgtggcagcattgtttacctaa |
218 |
Q |
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| T |
23026490 |
aatttgtacccaatgtagtgtttatatcttcatcagtattatctattattttcttactggtaggttttgcagcattgtttacctaa |
23026405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 54 - 172
Target Start/End: Complemental strand, 23092057 - 23091939
Alignment:
| Q |
54 |
gatatgaacactatgcttccatatccagattcttttagaagtgggtatgctagttgacaaagatggtaaccagactcaaaatttgtacccattgtagtta |
153 |
Q |
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| T |
23092057 |
gatatgtatactatgcttccatatccagattgttttagaagaggatgtgcaagttgacacaaatggtaactagacacaaaattggtaccaattgtagatg |
23091958 |
T |
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| Q |
154 |
ctatatcttcagcagtata |
172 |
Q |
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| T |
23091957 |
ctatatcttcatcagtata |
23091939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 50 - 171
Target Start/End: Complemental strand, 23069248 - 23069127
Alignment:
| Q |
50 |
agaagatatgaacactatgcttccatatccagattcttttagaagtgggtatgctagttgacaaagatggtaaccagactcaaaatttgtacccattgta |
149 |
Q |
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|||||||||| | || ||||| ||||||||||||||||||| |||||||| ||| |||||||| | |||||||| ||| ||||| || ||||||||||| |
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| T |
23069248 |
agaagatatggatacaatgctcccatatccagattcttttaaaagtgggtgtgcaagttgacacaaatggtaactagattcaaagttaatacccattgta |
23069149 |
T |
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| Q |
150 |
gttactatatcttcagcagtat |
171 |
Q |
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|| | |||||||||||||| |
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| T |
23069148 |
tttgtcacatcttcagcagtat |
23069127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 46 - 121
Target Start/End: Original strand, 30706204 - 30706279
Alignment:
| Q |
46 |
caacagaagatatgaacactatgcttccatatccagattcttttagaagtgggtatgctagttgacaaagatggta |
121 |
Q |
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| T |
30706204 |
caacagaggaaatgaacacaatgcttccatttccagattctttaagaagaggatatgctagttgacatagatggta |
30706279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 30790384 - 30790331
Alignment:
| Q |
41 |
acctccaacagaagatatgaacactatgcttccatatccagattcttttagaag |
94 |
Q |
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|||| ||||||| || |||||||| ||||| |||| |||||||||||||||||| |
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| T |
30790384 |
acctgcaacagatgaaatgaacacaatgctaccatttccagattcttttagaag |
30790331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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