View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11940_low_17 (Length: 469)

Name: NF11940_low_17
Description: NF11940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11940_low_17
NF11940_low_17
[»] chr1 (2 HSPs)
chr1 (277-390)||(48674177-48674287)
chr1 (196-253)||(48674057-48674114)
[»] chr4 (2 HSPs)
chr4 (277-390)||(21371695-21371808)
chr4 (277-390)||(21385749-21385862)
[»] chr5 (1 HSPs)
chr5 (287-386)||(36199891-36199991)
[»] chr2 (4 HSPs)
chr2 (110-185)||(691178-691253)
chr2 (277-320)||(693226-693269)
chr2 (196-251)||(691315-691370)
chr2 (200-254)||(693110-693165)


Alignment Details
Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 277 - 390
Target Start/End: Original strand, 48674177 - 48674287
Alignment:
Q  277 cagctgcagtcccattaacaagtccaacaatcttcctattaaacgtagtactcatctaatattggcaagaatccaaagttgccaaagagaaaccaatcat 376  Q
    |||| |||||||||||||||||||||| |||||||||||||||| ||   |||||| |||||||| ||||| | ||||||||||||||||||||||||||    
T  48674177 cagcagcagtcccattaacaagtccaataatcttcctattaaacata---ctcatccaatattggtaagaaacaaaagttgccaaagagaaaccaatcat 48674273  T
Q  377 gaacctaactgcta 390  Q
    ||||||||||||||    
T  48674274 gaacctaactgcta 48674287  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 196 - 253
Target Start/End: Original strand, 48674057 - 48674114
Alignment:
Q  196 atcagaatgtgaagtagaaaactaaggcctaactaaaaaatgaggaagagtcttctag 253  Q
    |||||||| |||||| |||||||| |||||||| |||| ||| |||||||||||||||    
T  48674057 atcagaatatgaagtggaaaactacggcctaacaaaaagatggggaagagtcttctag 48674114  T

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Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 277 - 390
Target Start/End: Complemental strand, 21371808 - 21371695
Alignment:
Q  277 cagctgcagtcccattaacaagtccaacaatcttcctattaaacgtagtactcatctaatattggcaagaatccaaagttgccaaagagaaaccaatcat 376  Q
    |||| ||||| |||||| ||||||||| ||| || ||||||||| ||||||||||| ||||||| || ||| | || |||||||||||||||||||||||    
T  21371808 cagcagcagtaccattagcaagtccaataattttactattaaacatagtactcatccaatattgacatgaaacaaatgttgccaaagagaaaccaatcat 21371709  T
Q  377 gaacctaactgcta 390  Q
     |||||||||||||    
T  21371708 aaacctaactgcta 21371695  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 277 - 390
Target Start/End: Original strand, 21385749 - 21385862
Alignment:
Q  277 cagctgcagtcccattaacaagtccaacaatcttcctattaaacgtagtactcatctaatattggcaagaatccaaagttgccaaagagaaaccaatcat 376  Q
    |||| ||||| |||||| ||||||||| ||| || ||||||||| ||||||||||| ||||||| || ||| | || |||||||||||||||||||||||    
T  21385749 cagcagcagtaccattagcaagtccaataattttactattaaacatagtactcatccaatattgacatgaaacaaatgttgccaaagagaaaccaatcat 21385848  T
Q  377 gaacctaactgcta 390  Q
     |||||||||||||    
T  21385849 aaacctaactgcta 21385862  T

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Target: chr5 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 287 - 386
Target Start/End: Complemental strand, 36199991 - 36199891
Alignment:
Q  287 cccattaacaagtccaacaatcttcc-tattaaacgtagtactcatctaatattggcaagaatccaaagttgccaaagagaaaccaatcatgaacctaac 385  Q
    ||||||||||||||| ||| |||||| ||||||||||  ||||| ||  ||||||||||||| | |||||||| ||||| ||||||||||||||||||||    
T  36199991 cccattaacaagtcccacagtcttccctattaaacgtcttactcgtccgatattggcaagaaacaaaagttgctaaagacaaaccaatcatgaacctaac 36199892  T
Q  386 t 386  Q
    |    
T  36199891 t 36199891  T

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Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 110 - 185
Target Start/End: Original strand, 691178 - 691253
Alignment:
Q  110 ttcaattacttttagctccttgtcacaatgtgaattgcaccttgtatctaaaatctacaaaattgtacttgacaaa 185  Q
    ||||||||||||| ||||||||||| |  ||||||| ||||||||||| ||||||||||||| |||||||||||||    
T  691178 ttcaattacttttggctccttgtcagagggtgaatttcaccttgtatccaaaatctacaaaaatgtacttgacaaa 691253  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 277 - 320
Target Start/End: Original strand, 693226 - 693269
Alignment:
Q  277 cagctgcagtcccattaacaagtccaacaatcttcctattaaac 320  Q
    |||| ||||||||||||||||||||||||||| |||||||||||    
T  693226 cagcagcagtcccattaacaagtccaacaatcctcctattaaac 693269  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 251
Target Start/End: Original strand, 691315 - 691370
Alignment:
Q  196 atcagaatgtgaagtagaaaactaaggcctaactaaaaaatgaggaagagtcttct 251  Q
    ||||||||||||||||||||| || |||||||| |||| || |||||||| |||||    
T  691315 atcagaatgtgaagtagaaaattacggcctaacaaaaagataaggaagagacttct 691370  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 254
Target Start/End: Original strand, 693110 - 693165
Alignment:
Q  200 gaatgtgaagtagaaaactaaggcctaactaaaaa-atgaggaagagtcttctagc 254  Q
    ||||||| ||||||||| || |||||||||||||| ||| ||||||||||||||||    
T  693110 gaatgtgcagtagaaaattatggcctaactaaaaagatgtggaagagtcttctagc 693165  T

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