View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11940_low_19 (Length: 459)
Name: NF11940_low_19
Description: NF11940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11940_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 17 - 458
Target Start/End: Original strand, 37592320 - 37592761
Alignment:
| Q |
17 |
acatcagtttggtttcgatttcacagaaacaaccttcattccttctattcgcaacaagactcttctcaactctacaagatgtgtatttcgccaacctcaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
37592320 |
acatcagtttggtttcgatttcacagaaacaaccttcattccttctattcgcaacaagactcttctcaactcaacaagatgtgtatttcgccaacctcaa |
37592419 |
T |
|
| Q |
117 |
catcacagcactctcacgcgccggtaacatcgccgccgcacgccaactgttcgacaaaacgtcccaaaaagatattgtcacatataactccatgctcacc |
216 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37592420 |
catcacagcactctcacgcgccggtaacatcaccgccgcacgccaactgttcgacaaaacgtcccaaaaagatattgtcacatataactccatgctcacc |
37592519 |
T |
|
| Q |
217 |
gcatactggcaaaacggctttctacaacactccaaatcactcttcaattcaatgccaatcaaaaacattgtctcatggaactccattataaccgcttgca |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37592520 |
gcatactggcaaaacggctttctacaacactccaaatcactcttcaattcaatcccaatcaaaaacattgtctcatggaactccattataaccgcttgca |
37592619 |
T |
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| Q |
317 |
ttcaaaacgataacatcaacgatgcgtttagttactttacagcaatgccggagaaaaatgttgcttcgtacaatgctatgatgtcgggttttgttaaaat |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37592620 |
ttcaaaacgataacatcaacgatgcgtttagttactttacagcaatgccggagaaaaatgttgcttcgtacaatgctatgatgtcgggttttgttaaaat |
37592719 |
T |
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| Q |
417 |
gggacgtgtggaggaagcaaagaaggtgtttcaagaaatccc |
458 |
Q |
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| T |
37592720 |
gggacgtgtggaggaagcaaagaaggtgtttgaagaaatccc |
37592761 |
T |
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