View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11940_low_2 (Length: 907)

Name: NF11940_low_2
Description: NF11940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11940_low_2
NF11940_low_2
[»] chr6 (13 HSPs)
chr6 (13-585)||(13767338-13767910)
chr6 (648-868)||(13767077-13767275)
chr6 (754-837)||(24386337-24386420)
chr6 (754-837)||(20084581-20084664)
chr6 (752-829)||(23595067-23595144)
chr6 (756-824)||(22608279-22608347)
chr6 (754-840)||(2835088-2835174)
chr6 (753-837)||(2430507-2430592)
chr6 (754-843)||(11108064-11108153)
chr6 (754-840)||(18980402-18980488)
chr6 (754-840)||(20084730-20084816)
chr6 (754-822)||(9068531-9068599)
chr6 (788-843)||(7915596-7915651)
[»] chr7 (14 HSPs)
chr7 (754-843)||(28805144-28805233)
chr7 (754-846)||(22740052-22740144)
chr7 (752-841)||(22033184-22033272)
chr7 (754-846)||(32964877-32964969)
chr7 (762-843)||(31303352-31303433)
chr7 (769-828)||(18312967-18313026)
chr7 (769-840)||(26240202-26240272)
chr7 (754-840)||(15958210-15958296)
chr7 (754-840)||(20556895-20556981)
chr7 (754-840)||(28804884-28804970)
chr7 (754-823)||(22032980-22033048)
chr7 (754-841)||(5083689-5083776)
chr7 (754-828)||(21589749-21589823)
chr7 (754-843)||(15958435-15958523)
[»] chr2 (9 HSPs)
chr2 (754-846)||(41212432-41212524)
chr2 (769-834)||(33667456-33667521)
chr2 (752-843)||(45305866-45305957)
chr2 (754-836)||(1400675-1400757)
chr2 (754-840)||(28527221-28527306)
chr2 (769-840)||(34175249-34175320)
chr2 (762-828)||(30906180-30906246)
chr2 (754-840)||(30905948-30906034)
chr2 (781-831)||(45306118-45306168)
[»] chr4 (12 HSPs)
chr4 (754-837)||(17633242-17633325)
chr4 (752-841)||(14351186-14351275)
chr4 (754-840)||(42908693-42908779)
chr4 (754-818)||(24669299-24669363)
chr4 (754-840)||(1966732-1966817)
chr4 (780-843)||(9810659-9810722)
chr4 (764-822)||(19596700-19596758)
chr4 (762-843)||(9808973-9809054)
chr4 (754-827)||(55666945-55667018)
chr4 (801-840)||(15523143-15523182)
chr4 (781-840)||(42903609-42903668)
chr4 (769-842)||(16583496-16583569)
[»] chr5 (8 HSPs)
chr5 (754-840)||(15221690-15221776)
chr5 (754-843)||(43262821-43262910)
chr5 (754-843)||(35922607-35922696)
chr5 (763-843)||(33958875-33958954)
chr5 (752-840)||(35922856-35922943)
chr5 (754-817)||(19621593-19621656)
chr5 (785-835)||(30704508-30704558)
chr5 (769-840)||(36169303-36169374)
[»] chr1 (12 HSPs)
chr1 (754-840)||(5855230-5855316)
chr1 (752-829)||(5831656-5831733)
chr1 (754-839)||(34490314-34490399)
chr1 (754-840)||(13351011-13351097)
chr1 (752-843)||(34364132-34364223)
chr1 (754-840)||(29676983-29677069)
chr1 (779-845)||(34941697-34941763)
chr1 (769-826)||(29677210-29677267)
chr1 (769-836)||(13350889-13350956)
chr1 (769-840)||(34364371-34364442)
chr1 (769-806)||(517548-517585)
chr1 (780-841)||(38952059-38952120)
[»] chr3 (14 HSPs)
chr3 (755-840)||(11501397-11501482)
chr3 (756-840)||(19280325-19280409)
chr3 (756-840)||(39126293-39126377)
chr3 (754-829)||(3823564-3823639)
chr3 (769-843)||(9710854-9710928)
chr3 (754-843)||(3785861-3785950)
chr3 (755-840)||(33488363-33488448)
chr3 (769-845)||(19624447-19624522)
chr3 (754-840)||(5342002-5342088)
chr3 (769-829)||(18733615-18733675)
chr3 (774-845)||(27335286-27335357)
chr3 (754-840)||(3823777-3823863)
chr3 (769-843)||(27040723-27040797)
chr3 (756-829)||(22432458-22432531)
[»] chr8 (5 HSPs)
chr8 (761-819)||(5322090-5322148)
chr8 (752-846)||(38606719-38606813)
chr8 (754-843)||(24576181-24576270)
chr8 (769-840)||(5573921-5573992)
chr8 (762-843)||(33286116-33286197)
[»] scaffold1126 (1 HSPs)
scaffold1126 (761-828)||(337-404)
[»] scaffold0016 (1 HSPs)
scaffold0016 (769-840)||(49410-49480)


Alignment Details
Target: chr6 (Bit Score: 419; Significance: 0; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 13 - 585
Target Start/End: Complemental strand, 13767910 - 13767338
Alignment:
Q  13 caaaggggaaaagaacaattttccaaaaccactccacaccaagaattatctagctaaacaatcttttggatttcaactccattcaatcatgtgtgaggtg 112  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13767910 caaagggaaaaggaacaattttccaaaaccactccacaccaagaattatctagctaaacaatcttttggatttcaactccattcaatcatgtgtgaggtg 13767811  T
Q  113 taattttgttggatttgttgagttgggtacagacaaggacaaaaggggaatcaaagtcagaaagtgaaaaggatacgttgcattcttacattagcaaata 212  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  13767810 taattttgttggttttgttgagttgggtacagacaaggacaaaaggggaatcaaagtcagaaagtgaaaaggatacgttgcattattacattagcaaata 13767711  T
Q  213 aatgaagagaacgacatttacccgccatttcaattttttc-----tttgtaaacaaatagaaataatacaaagaaaaaactgttgcagaatgtacgtatt 307  Q
    ||||||||||||||||||||||||||||||||||||||||     ||||||||||||||| |||||||||| |||||||||||||||||||    |||||    
T  13767710 aatgaagagaacgacatttacccgccatttcaattttttcttctgtttgtaaacaaatagcaataatacaatgaaaaaactgttgcagaat----gtatt 13767615  T
Q  308 tgttaacttttaaatattattttcgtnnnnnnntaaatttaataattttcataggaatacatcctccaaaaaacatttaaacgttaatatagatttaata 407  Q
    ||||||||||||||||||||||||||         ||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13767614 tgttaacttttaaatattattttcgtaaaaaaa-gaatttaatagttttcctaggaatacatcctctaaaaaacatttaaacgttaatatagatttaata 13767516  T
Q  408 atcaattatttttcagnnnnnnnnnnngaattaatatatactagcacttggtataaattcttgtgatcaaactttgaagaacaactcctcaattccctca 507  Q
    ||||||||||||||||           |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||| ||    
T  13767515 atcaattatttttcagaaaaaaaataagaattaatatatactagcacctggtataaattcttgtgatcaaaatttgaagaacaacttctcaattccccca 13767416  T
Q  508 actcaaatcaattaactgttgtgatttcaatacaacgagactctttttaaggattctaaatgataagtttttacgaac 585  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13767415 actcaaatcaattaacttttgtgatttcaatacaacgagactctttttaaggattctaaatgataagtttttacgaac 13767338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 648 - 868
Target Start/End: Complemental strand, 13767275 - 13767077
Alignment:
Q  648 caaatgtttatttgaaggacaaatgtttataagacccctatgtaaagccaacataatagtaaggctacatacaatcaccatatgtattcacgcaattnnn 747  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||                  
T  13767275 caaatgtttatttgaaggacaattgtttataagaccccgatgtaaagccaacataatagtaaggctacatacaatcaccatatgta-------------- 13767190  T
Q  748 nnnntatggtcagacagaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatcattattgttg 847  Q
            |||||||||||| |||||||||| ||||||||||||  ||||||||||||||||||||||||||| || |||||||| ||||||||||||||    
T  13767189 --------gtcagacagaccatatatttggttaacttaaattttctagagtgatacaaaggagtgtacacatttagagtgtcaacttatcattattgttg 13767098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 754 - 837
Target Start/End: Original strand, 24386337 - 24386420
Alignment:
Q  754 tggtcagacagaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatc 837  Q
    |||||| ||||||| |||||||||| |||||||||||||||| ||| || |||||  |||||||||||||||||||||||||||    
T  24386337 tggtcacacagaccatatatttggttaacttaaatttttcagcgtggtataaagggatgtacacattaagggtgtcaacctatc 24386420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 754 - 837
Target Start/End: Complemental strand, 20084664 - 20084581
Alignment:
Q  754 tggtcagacagaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatc 837  Q
    |||||| ||| ||| |||||||||| ||||||||||||||||  || || |||||  |||||||||||||||||||||||||||    
T  20084664 tggtcacacataccatatatttggttaacttaaatttttcagcatggtataaagggatgtacacattaagggtgtcaacctatc 20084581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 752 - 829
Target Start/End: Complemental strand, 23595144 - 23595067
Alignment:
Q  752 tatggtcagacagaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtc 829  Q
    |||||||| ||||||| ||||||| || ||||||||||||  ||||||||||||| | ||||||||||||| ||||||    
T  23595144 tatggtcacacagaccatatatttagttaacttaaattttcgagagtgatacaaaagggtgtacacattaaaggtgtc 23595067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 756 - 824
Target Start/End: Complemental strand, 22608347 - 22608279
Alignment:
Q  756 gtcagacagaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagg 824  Q
    |||| ||||||| |||||||||| |||| |||||||| |||||| |||||||| |||||||||||||||    
T  22608347 gtcacacagaccatatatttggttaactaaaatttttgagagtggtacaaaggggtgtacacattaagg 22608279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 754 - 840
Target Start/End: Original strand, 2835088 - 2835174
Alignment:
Q  754 tggtcagacagaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatcatt 840  Q
    |||||| |||||  ||||||||||| |||||||||||||||||||| ||||||    | |||||||||||| |||| ||||||||||    
T  2835088 tggtcacacagatggtatatttggttaacttaaatttttcagagtggtacaaattgatatacacattaaggctgtctacctatcatt 2835174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 753 - 837
Target Start/End: Complemental strand, 2430592 - 2430507
Alignment:
Q  753 atggtcagacagaccgtatatttggtcaacttaaattttt-cagagtgatacaaaggagtgtacacattaagggtgtcaacctatc 837  Q
    ||||||| ||||| | ||||||| || |||| |||||||| |||| || ||||||||| ||||||||||||||||||| |||||||    
T  2430592 atggtcacacagatcatatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacctatc 2430507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 754 - 843
Target Start/End: Complemental strand, 11108153 - 11108064
Alignment:
Q  754 tggtcagacagaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatcattatt 843  Q
    |||||| ||||||| |||||||||| || | ||||||||||||||  |||||  || ||||||||||||| ||||| ||||| |||||||    
T  11108153 tggtcacacagaccatatatttggttaattgaaatttttcagagtagtacaagtgaatgtacacattaagagtgtctacctaccattatt 11108064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 754 - 840
Target Start/End: Original strand, 18980402 - 18980488
Alignment:
Q  754 tggtcagacagaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatcatt 840  Q
    |||||| | ||||| ||||||| || |||||| ||||| ||||||| ||||||   |||| ||||||||| ||||||||||||||||    
T  18980402 tggtcacatagaccatatatttagttaacttagattttgcagagtggtacaaaaaggtgtgcacattaagagtgtcaacctatcatt 18980488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 754 - 840
Target Start/End: Original strand, 20084730 - 20084816
Alignment:
Q  754 tggtcagacagaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatcatt 840  Q
    |||||| | ||||| ||||||| || |||||| ||||| |||| || ||||||  ||| ||||||||||| ||||||||||||||||    
T  20084730 tggtcacatagaccatatatttagttaacttagattttgcagaatggtacaaaaaagtctacacattaagagtgtcaacctatcatt 20084816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 754 - 822
Target Start/End: Original strand, 9068531 - 9068599
Alignment:
Q  754 tggtcagacagaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaa 822  Q
    |||||| ||| ||| |||||||| | |||| ||||||||||||||| |||||| | |||||||||||||    
T  9068531 tggtcacacataccatatatttgattaactaaaatttttcagagtggtacaaaagggtgtacacattaa 9068599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 788 - 843
Target Start/End: Complemental strand, 7915651 - 7915596
Alignment:
Q  788 tttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatcattatt 843  Q
    ||||||||||||||||||| | ||||||||||||| |||||| ||| ||| |||||    
T  7915651 tttttcagagtgatacaaaagggtgtacacattaaaggtgtctaccgatctttatt 7915596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 2e-21; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 754 - 843
Target Start/End: Original strand, 28805144 - 28805233
Alignment:
Q  754 tggtcagacagaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatcattatt 843  Q
    |||||| ||| ||| |||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| ||| ||| |||||    
T  28805144 tggtcacacataccatatatttggttaacttaaatttttcagagtgatacaaaggggtatacacattaagggtgtctaccaatctttatt 28805233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 754 - 846
Target Start/End: Complemental strand, 22740144 - 22740052
Alignment:
Q  754 tggtcagacagaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatcattattgtt 846  Q
    |||||| ||||||| |||||||| | ||||||||| ||||||||||||||| ||  |||||||||||||| ||||||| |||||||| |||||    
T  22740144 tggtcacacagaccatatatttgattaacttaaatatttcagagtgatacatagaggtgtacacattaagagtgtcaatctatcattgttgtt 22740052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 752 - 841
Target Start/End: Original strand, 22033184 - 22033272
Alignment:
Q  752 tatggtcagacagaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatcatta 841  Q
    |||||||| ||||||| |||||||||| |||| |||||||||||| || ||||||||| ||||||||||||| || |||||| |||||||    
T  22033184 tatggtcacacagaccatatatttggttaactaaaatttttcagaatggtacaaagga-tgtacacattaagagtctcaacccatcatta 22033272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 754 - 846
Target Start/End: Original strand, 32964877 - 32964969
Alignment:
Q  754 tggtcagacagaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatcattattgtt 846  Q
    |||||| ||||||| ||||| | || ||||||||||||| ||||||||||||| | ||||| ||||||| |||||| || ||||||| |||||    
T  32964877 tggtcacacagaccatatatatagttaacttaaattttttagagtgatacaaaagggtgtatacattaaaggtgtctacatatcattgttgtt 32964969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 762 - 843
Target Start/End: Complemental strand, 31303433 - 31303352
Alignment:
Q  762 cagaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatcattatt 843  Q
    |||||| | ||||||||  ||| |||||||||||||||||||||| |  ||||||||||||||||||| ||| ||| |||||    
T  31303433 cagaccatgtatttggttgactgaaatttttcagagtgatacaaatggatgtacacattaagggtgtctaccaatctttatt 31303352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 769 - 828
Target Start/End: Original strand, 18312967 - 18313026
Alignment:
Q  769 tatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgt 828  Q
    |||||||||| | || ||||||||||||||| ||||||||||||| ||||||||| ||||    
T  18312967 tatatttggttagctgaaatttttcagagtggtacaaaggagtgtgcacattaagagtgt 18313026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 769 - 840
Target Start/End: Original strand, 26240202 - 26240272
Alignment:
Q  769 tatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatcatt 840  Q
    ||||||| || ||||||||||||| ||| || ||||||||||| |||||||||| ||||| |||||||||||    
T  26240202 tatatttagttaacttaaattttttagaatggtacaaaggagtatacacattaa-ggtgtgaacctatcatt 26240272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 754 - 840
Target Start/End: Complemental strand, 15958296 - 15958210
Alignment:
Q  754 tggtcagacagaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatcatt 840  Q
    |||||| || |||| |||||||||| ||||||||||||||| ||||||| |||  | | || ||||||| | |||||||||||||||    
T  15958296 tggtcacactgaccatatatttggttaacttaaatttttcaaagtgatataaataaatttatacattaacgatgtcaacctatcatt 15958210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 754 - 840
Target Start/End: Original strand, 20556895 - 20556981
Alignment:
Q  754 tggtcagacagaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatcatt 840  Q
    |||||| ||||||  ||||||| || |||| ||| |||||| |||||||||||||||||| || ||||||| | || ||||||||||    
T  20556895 tggtcaaacagactatatatttagttaactgaaaattttcaaagtgatacaaaggagtgtgcatattaaggatatctacctatcatt 20556981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 754 - 840
Target Start/End: Complemental strand, 28804970 - 28804884
Alignment:
Q  754 tggtcagacagaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatcatt 840  Q
    |||||| | ||||| |||||||||| |||| |||||||  ||| || |||||| | ||||||| |||||||||||| ||||||||||    
T  28804970 tggtcacatagaccatatatttggttaactgaaattttctagaatggtacaaaagggtgtacatattaagggtgtctacctatcatt 28804884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 754 - 823
Target Start/End: Complemental strand, 22033048 - 22032980
Alignment:
Q  754 tggtcagacagaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaag 823  Q
    |||||| ||| ||| |||||||||| ||||||||||||  |||||| ||||||||| |||||||||||||    
T  22033048 tggtcacacataccatatatttggttaacttaaattttaaagagtggtacaaagga-tgtacacattaag 22032980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 754 - 841
Target Start/End: Complemental strand, 5083776 - 5083689
Alignment:
Q  754 tggtcagacagaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatcatta 841  Q
    |||||| | ||||| |||||||| | |||| |||||||||| ||||||| ||||| || || | ||||||| |||| |||||||||||    
T  5083776 tggtcacaaagaccatatatttgattaactgaaatttttcaaagtgatataaaggggtatatagattaaggatgtctacctatcatta 5083689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 754 - 828
Target Start/End: Original strand, 21589749 - 21589823
Alignment:
Q  754 tggtcagacagaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgt 828  Q
    |||||| ||||||| |||||||||  |||| |||||||| |||||| || ||| |  ||||||||||||||||||    
T  21589749 tggtcacacagaccatatatttggataactgaaattttttagagtggtataaacggatgtacacattaagggtgt 21589823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 754 - 843
Target Start/End: Original strand, 15958435 - 15958523
Alignment:
Q  754 tggtcagacagaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatcattatt 843  Q
    |||||| ||||||| ||||||| || |||| ||||||| ||||||| |||| |  ||||||||| ||||  ||||||||||||| |||||    
T  15958435 tggtcacacagaccatatatttagttaactgaaattttacagagtggtacagaa-agtgtacacgttaaaagtgtcaacctatctttatt 15958523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 6e-21; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 754 - 846
Target Start/End: Original strand, 41212432 - 41212524
Alignment:
Q  754 tggtcagacagaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatcattattgtt 846  Q
    |||||| ||||||| |||||||||| |||||||||||||||||||| |||||||| || |||| |||||||||||||| | |||||| |||||    
T  41212432 tggtcacacagaccatatatttggttaacttaaatttttcagagtggtacaaaggggtatacatattaagggtgtcaatcgatcattgttgtt 41212524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 769 - 834
Target Start/End: Original strand, 33667456 - 33667521
Alignment:
Q  769 tatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacct 834  Q
    |||||||||| |||| ||||||||||||||| |||||| ||||||||| |||||||||||||||||    
T  33667456 tatatttggttaactaaaatttttcagagtggtacaaaagagtgtacatattaagggtgtcaacct 33667521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 752 - 843
Target Start/End: Complemental strand, 45305957 - 45305866
Alignment:
Q  752 tatggtcagacagaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatcattatt 843  Q
    |||||||| ||||||  |||||||| | |||| |||||||| |||||| |||||||||||||||| ||||||||||| || ||||| |||||    
T  45305957 tatggtcatacagactatatatttgattaactgaaattttttagagtggtacaaaggagtgtacatattaagggtgtaaatctatctttatt 45305866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 754 - 836
Target Start/End: Complemental strand, 1400757 - 1400675
Alignment:
Q  754 tggtcagacagaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctat 836  Q
    |||||| ||| ||| |||||||||| |||| |||||||||||| || |||||| | |||||||||||||||||||| ||||||    
T  1400757 tggtcacacataccatatatttggttaactgaaatttttcagattggtacaaaagggtgtacacattaagggtgtctacctat 1400675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 754 - 840
Target Start/End: Complemental strand, 28527306 - 28527221
Alignment:
Q  754 tggtcagacagaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatcatt 840  Q
    |||||| ||||||| |||||||||| | || |||||||||| |||| |||||||| ||||||| |||||||||||| ||||||||||    
T  28527306 tggtcacacagaccatatatttggttagctgaaatttttcaaagtggtacaaaggggtgtaca-attaagggtgtctacctatcatt 28527221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 769 - 840
Target Start/End: Original strand, 34175249 - 34175320
Alignment:
Q  769 tatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatcatt 840  Q
    |||||||| | ||||||||||||| ||| || |||||| | ||||||||||||| |||||||||||||||||    
T  34175249 tatatttgattaacttaaattttttagaatggtacaaatgggtgtacacattaatggtgtcaacctatcatt 34175320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 762 - 828
Target Start/End: Original strand, 30906180 - 30906246
Alignment:
Q  762 cagaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgt 828  Q
    |||||| |||||||||| |||| ||||||||||||||| |||||| | ||||||||||||| |||||    
T  30906180 cagaccatatatttggttaactgaaatttttcagagtggtacaaaagggtgtacacattaaaggtgt 30906246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 754 - 840
Target Start/End: Complemental strand, 30906034 - 30905948
Alignment:
Q  754 tggtcagacagaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatcatt 840  Q
    |||||| ||||||  ||||| |||| |||| ||| |||||||| || ||||||||  ||||||||||||| ||||| ||||||||||    
T  30906034 tggtcacacagacaatatatctggttaactaaaaattttcagaatgttacaaagggatgtacacattaagagtgtctacctatcatt 30905948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 781 - 831
Target Start/End: Original strand, 45306118 - 45306168
Alignment:
Q  781 acttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaa 831  Q
    |||||||||||| ||| ||||| ||| ||||||||||||||||| ||||||    
T  45306118 acttaaattttttagaatgatataaatgagtgtacacattaaggatgtcaa 45306168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 754 - 837
Target Start/End: Complemental strand, 17633325 - 17633242
Alignment:
Q  754 tggtcagacagaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatc 837  Q
    |||||| ||||||| |||||||||| |||| ||||||||| ||||| |||||| ||||||||||||||| ||||||||||||||    
T  17633325 tggtcacacagaccatatatttggttaactaaaatttttcggagtggtacaaatgagtgtacacattaaaggtgtcaacctatc 17633242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 752 - 841
Target Start/End: Original strand, 14351186 - 14351275
Alignment:
Q  752 tatggtcagacagaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatcatta 841  Q
    |||||||| ||| ||| |||||||||| |||| || ||||| |||||| ||||||| |||| |||||||||||||||| |||||||||||    
T  14351186 tatggtcacacaaaccatatatttggttaactaaattttttgagagtggtacaaagaagtgcacacattaagggtgtctacctatcatta 14351275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 754 - 840
Target Start/End: Original strand, 42908693 - 42908779
Alignment:
Q  754 tggtcagacagaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatcatt 840  Q
    |||||| ||| ||| |||||||||| |||||||||||||||||||| |||||| ||||| ||| ||||| | ||| |||||||||||    
T  42908693 tggtcacacataccatatatttggttaacttaaatttttcagagtggtacaaatgagtgcacatattaaagatgttaacctatcatt 42908779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 754 - 818
Target Start/End: Original strand, 24669299 - 24669363
Alignment:
Q  754 tggtcagacagaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacaca 818  Q
    |||||| ||||||| |||||||| | |||||||||||||||||||| |||||||| |||||||||    
T  24669299 tggtcacacagaccatatatttgattaacttaaatttttcagagtggtacaaaggggtgtacaca 24669363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 754 - 840
Target Start/End: Complemental strand, 1966817 - 1966732
Alignment:
Q  754 tggtcagacagaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatcatt 840  Q
    |||||| ||||||| |||||||||| |||| ||||||| ||||||| |||||| | ||||| ||| |||||||||| ||||||||||    
T  1966817 tggtcacacagaccatatatttggttaactgaaatttt-cagagtggtacaaaagggtgtatacagtaagggtgtctacctatcatt 1966732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 780 - 843
Target Start/End: Complemental strand, 9810722 - 9810659
Alignment:
Q  780 aacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatcattatt 843  Q
    |||| |||||||||| |||| |||||| | ||||||| |||||||||||||||||||| |||||    
T  9810722 aactgaaatttttcatagtggtacaaaagggtgtacatattaagggtgtcaacctatctttatt 9810659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 764 - 822
Target Start/End: Complemental strand, 19596758 - 19596700
Alignment:
Q  764 gaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaa 822  Q
    |||| ||||||||||||||  | ||||||||||||| |||||||| |||||||||||||    
T  19596758 gaccatatatttggtcaacagagatttttcagagtggtacaaaggggtgtacacattaa 19596700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 762 - 843
Target Start/End: Complemental strand, 9809054 - 9808973
Alignment:
Q  762 cagaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatcattatt 843  Q
    |||||| ||||||| || |||| || ||||||| || | |||||| | ||||||| |||||||||||||||||||| |||||    
T  9809054 cagaccatatatttagttaactgaattttttcatagcggtacaaaagggtgtacatattaagggtgtcaacctatctttatt 9808973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 754 - 827
Target Start/End: Original strand, 55666945 - 55667018
Alignment:
Q  754 tggtcagacagaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtg 827  Q
    |||||| ||||||| ||||||| || |||| |||||||  | |||| |||||||||||||||| ||||||||||    
T  55666945 tggtcacacagaccatatatttagttaactgaaattttcgaaagtggtacaaaggagtgtacatattaagggtg 55667018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 801 - 840
Target Start/End: Complemental strand, 15523182 - 15523143
Alignment:
Q  801 tacaaaggagtgtacacattaagggtgtcaacctatcatt 840  Q
    |||||||||||||||||||||| |||||| ||||||||||    
T  15523182 tacaaaggagtgtacacattaaaggtgtctacctatcatt 15523143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 781 - 840
Target Start/End: Original strand, 42903609 - 42903668
Alignment:
Q  781 acttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatcatt 840  Q
    |||||||||||||| | || |||||| ||||||||||||||| | ||| |||||||||||    
T  42903609 acttaaatttttcaaaatggtacaaacgagtgtacacattaaagatgttaacctatcatt 42903668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 769 - 842
Target Start/End: Complemental strand, 16583569 - 16583496
Alignment:
Q  769 tatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatcattat 842  Q
    |||||||||| |||| |||||||  |||||| ||||||||  ||||| ||||||||||||| ||| ||| ||||    
T  16583569 tatatttggttaactgaaattttcgagagtggtacaaagggatgtacgcattaagggtgtctaccaatctttat 16583496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 1e-19; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 754 - 840
Target Start/End: Original strand, 15221690 - 15221776
Alignment:
Q  754 tggtcagacagaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatcatt 840  Q
    |||||| ||||||| ||||||| || |||| |||||||||||| ||||||||||||||||||||||||| ||||||  |||||||||    
T  15221690 tggtcacacagaccatatatttagttaactgaaatttttcagaatgatacaaaggagtgtacacattaaaggtgtctgcctatcatt 15221776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 754 - 843
Target Start/End: Original strand, 43262821 - 43262910
Alignment:
Q  754 tggtcagacagaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatcattatt 843  Q
    |||||| ||||||| |||||||||| |||| |||||||||| |||  |||||||| |||||||||||||||||||| || |||| |||||    
T  43262821 tggtcacacagaccatatatttggttaactgaaatttttcaaagtagtacaaaggggtgtacacattaagggtgtctacttatctttatt 43262910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 754 - 843
Target Start/End: Complemental strand, 35922696 - 35922607
Alignment:
Q  754 tggtcagacagaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatcattatt 843  Q
    |||||| ||| ||| |||||||| | |||| ||||||||||||||||||||||||  ||||||||||||| ||||| ||| ||| |||||    
T  35922696 tggtcacacataccatatatttgattaactgaaatttttcagagtgatacaaagggatgtacacattaagtgtgtctaccgatctttatt 35922607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 763 - 843
Target Start/End: Complemental strand, 33958954 - 33958875
Alignment:
Q  763 agaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatcattatt 843  Q
    ||||| |||||||||| || | ||||||||||||||| ||||||||| | |||| |||||||||||| |||||||||||||    
T  33958954 agaccatatatttggttaagtgaaatttttcagagtggtacaaagga-tatacatattaagggtgtctacctatcattatt 33958875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 752 - 840
Target Start/End: Original strand, 35922856 - 35922943
Alignment:
Q  752 tatggtcagacagaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatcatt 840  Q
    |||||||  ||||||| || ||||||| ||||||||||||||| ||||||||||||  ||||||||||||| | |||| ||||||||||    
T  35922856 tatggtcccacagaccataaatttggttaacttaaatttttcaaagtgatacaaagcggtgtacacattaa-gatgtctacctatcatt 35922943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 754 - 817
Target Start/End: Original strand, 19621593 - 19621656
Alignment:
Q  754 tggtcagacagaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacac 817  Q
    |||||| ||| ||| |||||||||| |||| |||||||||||| || |||||||||||||||||    
T  19621593 tggtcacacataccatatatttggttaactgaaatttttcagaatggtacaaaggagtgtacac 19621656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 785 - 835
Target Start/End: Original strand, 30704508 - 30704558
Alignment:
Q  785 aaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaaccta 835  Q
    |||||||||| ||||||| |||| ||||||||||||||||||||| |||||    
T  30704508 aaatttttcaaagtgatataaagaagtgtacacattaagggtgtctaccta 30704558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 769 - 840
Target Start/End: Complemental strand, 36169374 - 36169303
Alignment:
Q  769 tatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatcatt 840  Q
    |||||||||| |||| |||||||||| |||| |||||||    |||||||||||| ||||| ||||||||||    
T  36169374 tatatttggttaactaaaatttttcaaagtggtacaaagagaagtacacattaagagtgtctacctatcatt 36169303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 754 - 840
Target Start/End: Original strand, 5855230 - 5855316
Alignment:
Q  754 tggtcagacagaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatcatt 840  Q
    |||||| ||| ||| |||||||||| |||||||||||||||||||| |||||| ||||||||| ||||  |||||| ||||||||||    
T  5855230 tggtcacacataccatatatttggttaacttaaatttttcagagtggtacaaaagagtgtacatattagtggtgtctacctatcatt 5855316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 752 - 829
Target Start/End: Original strand, 5831656 - 5831733
Alignment:
Q  752 tatggtcagacagaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtc 829  Q
    |||||||| ||||||| |||||||||| || | |||||||||||||||||||||||| |||||||| |||| ||||||    
T  5831656 tatggtcacacagaccatatatttggttaattgaaatttttcagagtgatacaaaggggtgtacacgttaaaggtgtc 5831733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 754 - 839
Target Start/End: Original strand, 34490314 - 34490399
Alignment:
Q  754 tggtcagacagaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatcat 839  Q
    |||||| ||||||| ||||||| || |||| ||||||||||||||| |||||||  |||||||||||||| ||||| |||||||||    
T  34490314 tggtcacacagaccatatattttgtaaactgaaatttttcagagtggtacaaagtggtgtacacattaagagtgtctacctatcat 34490399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 754 - 840
Target Start/End: Original strand, 13351011 - 13351097
Alignment:
Q  754 tggtcagacagaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatcatt 840  Q
    |||||| | ||||| |||||||||| || ||||||||||||||||| |||||||| ||||||||||||| | |||| | ||||||||    
T  13351011 tggtcacaaagaccatatatttggttaagttaaatttttcagagtggtacaaaggggtgtacacattaaagatgtctagctatcatt 13351097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 752 - 843
Target Start/End: Complemental strand, 34364223 - 34364132
Alignment:
Q  752 tatggtcagacagaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatcattatt 843  Q
    |||||||| ||||||| ||||||| || |||||||||||| ||||||| ||||||    ||| || ||||| |||||||||||||| |||||    
T  34364223 tatggtcacacagaccatatatttagttaacttaaattttccagagtggtacaaatagatgtgcatattaatggtgtcaacctatctttatt 34364132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 754 - 840
Target Start/End: Complemental strand, 29677069 - 29676983
Alignment:
Q  754 tggtcagacagaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatcatt 840  Q
    |||||| |||| || |||||||||| |||| |||||||||| |||| ||||||||   ||||||||||| |||||| | ||||||||    
T  29677069 tggtcacacaggccatatatttggttaactaaaatttttcaaagtgctacaaagggacgtacacattaaaggtgtctaactatcatt 29676983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 779 - 845
Target Start/End: Complemental strand, 34941763 - 34941697
Alignment:
Q  779 caacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatcattattgt 845  Q
    ||||| ||||||||||||||| ||||||||  |||||||||||||| ||||  ||||||||| ||||    
T  34941763 caactgaaatttttcagagtggtacaaagggatgtacacattaaggatgtcttcctatcattgttgt 34941697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 769 - 826
Target Start/End: Original strand, 29677210 - 29677267
Alignment:
Q  769 tatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggt 826  Q
    |||||||| | ||||||||||||| |||||| |||||||  |||||||||||||||||    
T  29677210 tatatttgtttaacttaaatttttgagagtggtacaaagaggtgtacacattaagggt 29677267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 769 - 836
Target Start/End: Complemental strand, 13350956 - 13350889
Alignment:
Q  769 tatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctat 836  Q
    |||||||||| |||| |||||||  |||||| |||||| | ||||||||||||||| |||| ||||||    
T  13350956 tatatttggttaactgaaattttcgagagtggtacaaaagggtgtacacattaaggatgtctacctat 13350889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 769 - 840
Target Start/End: Original strand, 34364371 - 34364442
Alignment:
Q  769 tatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatcatt 840  Q
    |||||||| | |||||||||||||||||||  ||||||||  ||||||| ||||  ||||||||| ||||||    
T  34364371 tatatttgattaacttaaatttttcagagtagtacaaagggatgtacacgttaaatgtgtcaaccaatcatt 34364442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 769 - 806
Target Start/End: Original strand, 517548 - 517585
Alignment:
Q  769 tatatttggtcaacttaaatttttcagagtgatacaaa 806  Q
    |||||||||| ||||||||||||| |||||||||||||    
T  517548 tatatttggttaacttaaatttttgagagtgatacaaa 517585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 780 - 841
Target Start/End: Original strand, 38952059 - 38952120
Alignment:
Q  780 aacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatcatta 841  Q
    |||| |||||||||||||||||||||||  ||||| || |||||| |||| | |||||||||    
T  38952059 aactgaaatttttcagagtgatacaaagaggtgtatactttaaggttgtctatctatcatta 38952120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 9e-17; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 755 - 840
Target Start/End: Original strand, 11501397 - 11501482
Alignment:
Q  755 ggtcagacagaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatcatt 840  Q
    ||||| ||||| | |||||||||| ||||||||||||  | |||| || |||||||||||||||||||| ||||||||||||||||    
T  11501397 ggtcacacagatcatatatttggttaacttaaattttctaaagtggtataaaggagtgtacacattaagtgtgtcaacctatcatt 11501482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 756 - 840
Target Start/End: Original strand, 19280325 - 19280409
Alignment:
Q  756 gtcagacagaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatcatt 840  Q
    |||| ||||||| |||||||| | |||| ||| ||||||||||| |||||| | |||||||||||||||||||| ||||||||||    
T  19280325 gtcacacagaccatatatttgattaactaaaaattttcagagtggtacaaacgggtgtacacattaagggtgtctacctatcatt 19280409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 756 - 840
Target Start/End: Original strand, 39126293 - 39126377
Alignment:
Q  756 gtcagacagaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatcatt 840  Q
    |||| ||||| | |||||||||| ||||||||||||||||| | |||||||| ||||||||||||||   ||||||| |||||||    
T  39126293 gtcacacagatcatatatttggttaacttaaatttttcagaataatacaaagaagtgtacacattaaaaatgtcaacttatcatt 39126377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 754 - 829
Target Start/End: Complemental strand, 3823639 - 3823564
Alignment:
Q  754 tggtcagacagaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtc 829  Q
    |||||| ||||||| |||| ||||| |||| |||||||  |||||| |||||||| ||||||||||||||||||||    
T  3823639 tggtcacacagaccatataattggttaactgaaattttcgagagtggtacaaaggggtgtacacattaagggtgtc 3823564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 769 - 843
Target Start/End: Original strand, 9710854 - 9710928
Alignment:
Q  769 tatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatcattatt 843  Q
    |||||||||| |||| ||||||||||||||| |||||||| ||||||| ||||||||| || ||| ||| |||||    
T  9710854 tatatttggttaactgaaatttttcagagtggtacaaaggggtgtacatattaagggtttctaccaatctttatt 9710928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 754 - 843
Target Start/End: Complemental strand, 3785950 - 3785861
Alignment:
Q  754 tggtcagacagaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatcattatt 843  Q
    |||||| ||||||| || | ||||| |||| |||||||  |||||| |||||||| |||||||||||||||||||| ||| ||| |||||    
T  3785950 tggtcacacagaccataaaattggttaactgaaattttcgagagtggtacaaaggggtgtacacattaagggtgtctaccaatctttatt 3785861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 755 - 840
Target Start/End: Original strand, 33488363 - 33488448
Alignment:
Q  755 ggtcagacagaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatcatt 840  Q
    ||||| ||| ||| ||||||| || ||||||||||||||||||| ||| ||| |||| |||||||||| |||||| | ||||||||    
T  33488363 ggtcatacataccatatatttagttaacttaaatttttcagagttatataaatgagtatacacattaaaggtgtctaactatcatt 33488448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 769 - 845
Target Start/End: Original strand, 19624447 - 19624522
Alignment:
Q  769 tatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatcattattgt 845  Q
    |||||||||| || ||||| ||||||| ||  ||||||||| |||||||||||||| ||||||||||||||| ||||    
T  19624447 tatatttggttaaattaaaattttcagcgttgtacaaagga-tgtacacattaaggatgtcaacctatcattgttgt 19624522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 754 - 840
Target Start/End: Original strand, 5342002 - 5342088
Alignment:
Q  754 tggtcagacagaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatcatt 840  Q
    |||||| ||||||| |||||| | | |||| ||||||||||||||  |||||||| |||||| ||||| || |||| ||||||||||    
T  5342002 tggtcacacagaccatatattcgattaactgaaatttttcagagtcgtacaaaggggtgtacgcattagggatgtctacctatcatt 5342088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 769 - 829
Target Start/End: Original strand, 18733615 - 18733675
Alignment:
Q  769 tatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtc 829  Q
    ||||||| || ||||||||||||||||| || || ||||| ||||||||||||| ||||||    
T  18733615 tatatttagttaacttaaatttttcagaatggtataaaggggtgtacacattaaaggtgtc 18733675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 774 - 845
Target Start/End: Complemental strand, 27335357 - 27335286
Alignment:
Q  774 ttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatcattattgt 845  Q
    ||||| |||| ||| |||||||| || |||||||| ||||||||||||| | |||  |||||||||||||||    
T  27335357 ttggttaactcaaaattttcagaatggtacaaaggggtgtacacattaaagatgtttacctatcattattgt 27335286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 754 - 840
Target Start/End: Original strand, 3823777 - 3823863
Alignment:
Q  754 tggtcagacagaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatcatt 840  Q
    |||||| ||||||  |||||||||| ||||  |||||||| ||||  |||||| | ||| ||| |||||||||||| ||||||||||    
T  3823777 tggtcacacagacaatatatttggttaactggaatttttctgagtagtacaaacgggtgaacatattaagggtgtctacctatcatt 3823863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 769 - 843
Target Start/End: Original strand, 27040723 - 27040797
Alignment:
Q  769 tatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatcattatt 843  Q
    |||||||||| |||  |||||||  |||||  ||||||||| |||||||||| || ||||||||||||| |||||    
T  27040723 tatatttggttaaccgaaattttctagagtagtacaaaggaatgtacacattgagagtgtcaacctatctttatt 27040797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 756 - 829
Target Start/End: Original strand, 22432458 - 22432531
Alignment:
Q  756 gtcagacagaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtc 829  Q
    |||| ||||||| |||||||| |  ||| |||||||||| |||| |||||| | |||||||||||||| |||||    
T  22432458 gtcacacagaccatatatttgatttactcaaatttttcaaagtgctacaaaagggtgtacacattaagagtgtc 22432531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 761 - 819
Target Start/End: Original strand, 5322090 - 5322148
Alignment:
Q  761 acagaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacat 819  Q
    ||||||| |||||||||| || | |||||||| ||||||||||||||||||||||||||    
T  5322090 acagaccatatatttggttaattgaaatttttgagagtgatacaaaggagtgtacacat 5322148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 752 - 846
Target Start/End: Complemental strand, 38606813 - 38606719
Alignment:
Q  752 tatggtcagacagaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatcattattgtt 846  Q
    |||||||| ||| ||| ||||||| || |||| ||||||||||||||| |||||||| || || | ||||||| |||| |||||||||| |||||    
T  38606813 tatggtcacacataccatatatttagttaactgaaatttttcagagtggtacaaaggggtctaaagattaaggatgtctacctatcattgttgtt 38606719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 754 - 843
Target Start/End: Original strand, 24576181 - 24576270
Alignment:
Q  754 tggtcagacagaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatcattatt 843  Q
    |||||| ||||||| |||||||||| || | |||||||  |||||| |||||||| |||||||||||| ||||||| ||| ||| |||||    
T  24576181 tggtcacacagaccatatatttggttaattgaaattttcgagagtggtacaaaggggtgtacacattacgggtgtctaccaatctttatt 24576270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 769 - 840
Target Start/End: Original strand, 5573921 - 5573992
Alignment:
Q  769 tatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatcatt 840  Q
    ||||||| || |||| |||| ||| |||||| |||||| ||||||||||||||| || ||| ||||||||||    
T  5573921 tatatttagttaactgaaatcttttagagtggtacaaaagagtgtacacattaaaggagtctacctatcatt 5573992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 762 - 843
Target Start/End: Complemental strand, 33286197 - 33286116
Alignment:
Q  762 cagaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatcattatt 843  Q
    |||||| |||||||||| || | || ||||| |||| | |||||| | |||||||||||||||||||| ||| ||| |||||    
T  33286197 cagaccatatatttggttaattaaatttttttagaggggtacaaatgggtgtacacattaagggtgtccaccaatctttatt 33286116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1126 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold1126
Description:

Target: scaffold1126; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 761 - 828
Target Start/End: Original strand, 337 - 404
Alignment:
Q  761 acagaccgtatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgt 828  Q
    ||||||| |||||||||| |||| ||| ||||||||||| |||||||   |||||| |||||||||||    
T  337 acagaccatatatttggttaactgaaaattttcagagtggtacaaagagatgtacaaattaagggtgt 404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 769 - 840
Target Start/End: Complemental strand, 49480 - 49410
Alignment:
Q  769 tatatttggtcaacttaaatttttcagagtgatacaaaggagtgtacacattaagggtgtcaacctatcatt 840  Q
    |||||||||| ||||||||||||||||| |||||  |||  ||||| | |||||||||||| ||||||||||    
T  49480 tatatttggttaacttaaatttttcagaatgata-taagacgtgtagaaattaagggtgtctacctatcatt 49410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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