View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11940_low_20 (Length: 449)

Name: NF11940_low_20
Description: NF11940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11940_low_20
NF11940_low_20
[»] chr7 (2 HSPs)
chr7 (8-425)||(12333203-12333621)
chr7 (8-425)||(6951114-6951532)
[»] chr4 (2 HSPs)
chr4 (8-425)||(18186557-18186975)
chr4 (330-380)||(32097845-32097895)
[»] chr3 (6 HSPs)
chr3 (8-425)||(13241954-13242372)
chr3 (242-425)||(54835364-54835547)
chr3 (158-226)||(31898036-31898104)
chr3 (158-226)||(31913745-31913813)
chr3 (158-226)||(31947393-31947461)
chr3 (388-425)||(29007060-29007097)
[»] chr5 (2 HSPs)
chr5 (292-425)||(39507281-39507414)
chr5 (15-233)||(39507422-39507653)
[»] scaffold0002 (1 HSPs)
scaffold0002 (25-195)||(250843-251011)
[»] chr1 (1 HSPs)
chr1 (52-119)||(42762710-42762777)
[»] chr6 (1 HSPs)
chr6 (43-75)||(1132369-1132401)


Alignment Details
Target: chr7 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 8 - 425
Target Start/End: Original strand, 12333203 - 12333621
Alignment:
Q  8 gagtagcataggtagcaatattagggctatacggactcgaaccgtagaccttctcggtaaaacagatcaaactattattatcaaaatgatttgaattgtt 107  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12333203 gagtagtataggtagcaatattagggctatacggactcgaaccgtagaccttctcggtaaaacagatcaaactattattatcaaaatgatttgaattgtt 12333302  T
Q  108 ttaaaaacccaacgtgcannnnnnnnngcattgggctttttcattaactgatagaaatatcaattagtctaccatcttttttctttacacaaagaaaaag 207  Q
    ||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12333303 ttaaaaacccaacgtgcatttttttttgcattgggctttttcattaactgatagaaatatcaattagtctaccatcttttttctttacacaaagaaaaag 12333402  T
Q  208 gaaatgattccctgtgctctgatttannnnnnnn-agattttaatctaagagcactaccaaagtttttcaaagaagaaggttatcctgacgtaggtctgc 306  Q
    ||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12333403 gaaatgattccctgtgctctgatttatttttttttagattttaatctaagagcactaccaaagtttttcaaagaagaaggttatcctgacgtaggtctgc 12333502  T
Q  307 ttttggcctggatcaactaaagttaaatggactctctatcaacccacttaaataaaaatatcaaataggaaatgaaacttcatacaccttaaagttcata 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12333503 ttttggcctggatcaactaaagttaaatggactctctatcaacccacttaaataaaaatatcaaataggaaatgaaacttcatacaccttaaagttcata 12333602  T
Q  407 agataggaagaaaagagaa 425  Q
    |||||||||||||||||||    
T  12333603 agataggaagaaaagagaa 12333621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 8 - 425
Target Start/End: Complemental strand, 6951532 - 6951114
Alignment:
Q  8 gagtagcataggtagcaatattagggctatacggactcgaaccgtagaccttctcggtaaaacagatcaaactattattatcaaaatgatttgaattgtt 107  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6951532 gagtagtataggtagcaatattagggctatacggactcgaaccgtagaccttctcggtaaaacagatcaaactattattatcaaaatgatttgaattgtt 6951433  T
Q  108 ttaaaaacccaacgtgcannnnnnnnngcattgggctttttcattaactgatagaaatatcaattagtctaccatcttttttctttacacaaagaaaaag 207  Q
    ||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6951432 ttaaaaacccaacgtgcatttttttttgcattgggctttttcattaactgatagaaatatcaattagtctaccatcttttttctttacacaaagaaaaag 6951333  T
Q  208 gaaatgattccctgtgctctgatttannnnnnnn-agattttaatctaagagcactaccaaagtttttcaaagaagaaggttatcctgacgtaggtctgc 306  Q
    ||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6951332 gaaatgattccctgtgctctgatttatttttttttagattttaatctaagagcactaccaaagtttttcaaagaagaaggttatcctgacgtaggtctgc 6951233  T
Q  307 ttttggcctggatcaactaaagttaaatggactctctatcaacccacttaaataaaaatatcaaataggaaatgaaacttcatacaccttaaagttcata 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6951232 ttttggcctggatcaactaaagttaaatggactctctatcaacccacttaaataaaaatatcaaataggaaataaaacttcatacaccttaaagttcata 6951133  T
Q  407 agataggaagaaaagagaa 425  Q
    |||||||||||||||||||    
T  6951132 agataggaagaaaagagaa 6951114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 8 - 425
Target Start/End: Original strand, 18186557 - 18186975
Alignment:
Q  8 gagtagcataggtagcaatattagggctatacggactcgaaccgtagaccttctcggtaaaacagatcaaactattattatcaaaatgatttgaattgtt 107  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18186557 gagtagtataggtagcaatattagggctatacggactcgaaccgtagaccttctcggtaaaacagatcaaactattattatcaaaatgatttgaattgtt 18186656  T
Q  108 ttaaaaacccaacgtgcannnnnnnnngcattgggctttttcattaactgatagaaatatcaattagtctaccatcttttttctttacacaaagaaaaag 207  Q
    ||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18186657 ttaaaaacccaacgtgcatttttttttgcattgggctttttcattaactgatagaaatatcaattagtctaccatcttttttctttacacaaagaaaaag 18186756  T
Q  208 gaaatgattccctgtgctctgatttannnnnnnn-agattttaatctaagagcactaccaaagtttttcaaagaagaaggttatcctgacgtaggtctgc 306  Q
    ||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18186757 gaaatgattccctgtgctctgatttatttttttttagattttaatctaagagcactaccaaagtttttcaaagaagaaggttatcctgacgtaggtctgc 18186856  T
Q  307 ttttggcctggatcaactaaagttaaatggactctctatcaacccacttaaataaaaatatcaaataggaaatgaaacttcatacaccttaaagttcata 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18186857 ttttggcctggatcaactaaagttaaatggactctctatcaacccacttaaataaaaatatcaaataggaaatgaaacttcatacaccttaaagttcata 18186956  T
Q  407 agataggaagaaaagagaa 425  Q
    |||||||||||||||||||    
T  18186957 agataggaagaaaagagaa 18186975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 330 - 380
Target Start/End: Original strand, 32097845 - 32097895
Alignment:
Q  330 taaatggactctctatcaacccacttaaataaaaatatcaaataggaaatg 380  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  32097845 taaatggactctctatcaacctacttaaataaaaatatcaaataggaaatg 32097895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 8 - 425
Target Start/End: Complemental strand, 13242372 - 13241954
Alignment:
Q  8 gagtagcataggtagcaatattagggctatacggactcgaaccgtagaccttctcggtaaaacagatcaaactattattatcaaaatgatttgaattgtt 107  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13242372 gagtagtataggtagcaatattagggctatacggactcgaaccgtagaccttctcggtaaaacagatcaaactattattatcaaaatgatttgaattgtt 13242273  T
Q  108 ttaaaaacccaacgtgcannnnnnnnngcattgggctttttcattaactgatagaaatatcaattagtctaccatcttttttctttacacaaagaaaaag 207  Q
    ||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13242272 ttaaaaacccaacgtgcatttttttttgcattgggctttttcattaactgatagaaatatcaattagtctaccatcttttttctttacacaaagaaaaag 13242173  T
Q  208 gaaatgattccctgtgctctgatttannnnnnnn-agattttaatctaagagcactaccaaagtttttcaaagaagaaggttatcctgacgtaggtctgc 306  Q
    ||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13242172 gaaatgattccctgtgctctgatttatttttttttagattttaatctaagagcactaccaaagtttttcaaagaagaaggttatcctgacgtaggtctgc 13242073  T
Q  307 ttttggcctggatcaactaaagttaaatggactctctatcaacccacttaaataaaaatatcaaataggaaatgaaacttcatacaccttaaagttcata 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13242072 ttttggcctggatcaactaaagttaaatggactctctatcaacccacttaaataaaaatatcaaataggaaatgaaacttcatacaccttaaagttcata 13241973  T
Q  407 agataggaagaaaagagaa 425  Q
    |||||||||||||||||||    
T  13241972 agataggaagaaaagagaa 13241954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 242 - 425
Target Start/End: Complemental strand, 54835547 - 54835364
Alignment:
Q  242 agattttaatctaagagcactaccaaagtttttcaaagaagaaggttatcctgacgtaggtctgcttttggcctggatcaactaaagttaaatggactct 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54835547 agattttaatctaagagcactaccaaagtttttcaaagaagaaggttatcctgacgtaggtctgcttttggcctggatcaactaaagttaaatggactct 54835448  T
Q  342 ctatcaacccacttaaataaaaatatcaaataggaaatgaaacttcatacaccttaaagttcataagataggaagaaaagagaa 425  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54835447 ctatcaacccacttaaataaaaatatcaaataggaaatgaaacttcatacaccttaaagttcataagataggaagaaaagagaa 54835364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 158 - 226
Target Start/End: Complemental strand, 31898104 - 31898036
Alignment:
Q  158 atagaaatatcaattagtctaccatcttttttctttacacaaagaaaaaggaaatgattccctgtgctc 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  31898104 atagaaatatcaattagtctaccatcttttttctttacacaaagaaaaaggaaatgactccctgtgctc 31898036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 158 - 226
Target Start/End: Complemental strand, 31913813 - 31913745
Alignment:
Q  158 atagaaatatcaattagtctaccatcttttttctttacacaaagaaaaaggaaatgattccctgtgctc 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  31913813 atagaaatatcaattagtctaccatcttttttctttacacaaagaaaaaggaaatgactccctgtgctc 31913745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 158 - 226
Target Start/End: Complemental strand, 31947461 - 31947393
Alignment:
Q  158 atagaaatatcaattagtctaccatcttttttctttacacaaagaaaaaggaaatgattccctgtgctc 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  31947461 atagaaatatcaattagtctaccatcttttttctttacacaaagaaaaaggaaatgactccctgtgctc 31947393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 388 - 425
Target Start/End: Original strand, 29007060 - 29007097
Alignment:
Q  388 atacaccttaaagttcataagataggaagaaaagagaa 425  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29007060 atacaccttaaagttcataagataggaagaaaagagaa 29007097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 292 - 425
Target Start/End: Complemental strand, 39507414 - 39507281
Alignment:
Q  292 ctgacgtaggtctgcttttggcctggatcaactaaagttaaatggactctctatcaacccacttaaataaaaatatcaaataggaaatgaaacttcatac 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39507414 ctgacgtaggtctgcttttggcctggatcaactaaagttaaatggactctctatcaacccacttaaataaaaatatcaaataggaaatgaaacttcatac 39507315  T
Q  392 accttaaagttcataagataggaagaaaagagaa 425  Q
    ||||||||||||||||||||||||||||||||||    
T  39507314 accttaaagttcataagataggaagaaaagagaa 39507281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 15 - 233
Target Start/End: Complemental strand, 39507653 - 39507422
Alignment:
Q  15 ataggtagcaatattagggctatacggactcgaaccgtagaccttctcggtaaaacagatcaaactattattatcaaaatgatttgaattgttttaaaaa 114  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  39507653 ataggtagcaatattatggctatacggactcgaaccgtagagcttctcggtaaaatagattaaactattattatcaaaatgatttgaattgttttaaaaa 39507554  T
Q  115 cccaacgtgcannnnnnnnn-------------gcattgggctttttcattaactgatagaaatatcaattagtctaccatcttttttctttacacaaag 201  Q
    |||||| ||||                      ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  39507553 cccaacatgcattttttttttttttttttttttgcattgggctttttcattaaccgatagaaatatcaattagtttaccatcttttttctttacacaaag 39507454  T
Q  202 aaaaaggaaatgattccctgtgctctgattta 233  Q
    ||||||||||||||||||||||||||||||||    
T  39507453 aaaaaggaaatgattccctgtgctctgattta 39507422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 25 - 195
Target Start/End: Original strand, 250843 - 251011
Alignment:
Q  25 atattagggctatacggactcgaaccgtagaccttctcggtaaaacagatcaaactattattatcaaaatgatttgaattgttttaaaaacccaacgtgc 124  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||| |||    
T  250843 atattagggctatacggattcgaaccgtagaccttctcggtaaaacagatcaaactattattatcaaaatgatttgaactgtttcaaagacccaacatgc 250942  T
Q  125 annnnnnnnngcattgggctttttcattaactgatagaaatatcaattagtctaccatcttttttctttac 195  Q
    |         |||||||||| |||||| |||||||  ||| |||| |||||| |||||  |||||||||||    
T  250943 a--tttttttgcattgggctctttcataaactgatttaaagatcagttagtccaccatagtttttctttac 251011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 52 - 119
Target Start/End: Complemental strand, 42762777 - 42762710
Alignment:
Q  52 tagaccttctcggtaaaacagatcaaactattattatcaaaatgatttgaattgttttaaaaacccaa 119  Q
    ||||| |||| ||||||||| || ||| ||||||||||||||||||||||||||||||||||| ||||    
T  42762777 tagactttctaggtaaaacaaataaaattattattatcaaaatgatttgaattgttttaaaaatccaa 42762710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 75
Target Start/End: Original strand, 1132369 - 1132401
Alignment:
Q  43 ctcgaaccgtagaccttctcggtaaaacagatc 75  Q
    |||||||||||||||||||||||||||||||||    
T  1132369 ctcgaaccgtagaccttctcggtaaaacagatc 1132401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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