View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11940_low_22 (Length: 445)
Name: NF11940_low_22
Description: NF11940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11940_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 19 - 430
Target Start/End: Complemental strand, 2655895 - 2655492
Alignment:
| Q |
19 |
aatgatgttacctctttgtctacattttctttgtcgttaaaaatcagatggcagattatgttctgttcatctattatgcaattagtcatttgatttcaag |
118 |
Q |
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||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2655895 |
aatgatgttacctgtttatctacattttctttgtcgttaataatcagatggcagattatgttctgttcatctattatacaattagtcatttgatttcaag |
2655796 |
T |
|
| Q |
119 |
actttgnnnnnnn-caattgctatttcctataatctaatattacgaatccataataaaagtcattgacatgttttcgtattattttccttcgcggctgat |
217 |
Q |
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|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
2655795 |
actttgtttttcttcaattgctatttgctataatctaatattacgaatccataataaaagtcattgacatgttttcgtattattttccttcgctgctaat |
2655696 |
T |
|
| Q |
218 |
aataatttggttcatttgattgattagtctaaaccacaatt-agtcattttgattgatcactgattccaataaggcaactcttttaatttataatcacaa |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||| || | | | ||||||||||||||||||||||||||||||||||||||| |
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| T |
2655695 |
aataatttggttcatttgattgattagtctaaaccacaattcaggccat----------agtgattccaataaggcaactcttttaatttataatcacaa |
2655606 |
T |
|
| Q |
317 |
attgaaatctccaaatgcagttttacatagcaaaattatttctgcatcaatgtcattctgttttaacgaagcaaacttaattttatgaatgcttctcctt |
416 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2655605 |
attgaaatctccaaatgcagttttacatagcaaaattgtttctgcatcaatgtcattctgtcttaacgaagcaaacttaattttatgaatgcttctcctt |
2655506 |
T |
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| Q |
417 |
cttttacgcctatg |
430 |
Q |
| |
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|||||||||||||| |
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| T |
2655505 |
cttttacgcctatg |
2655492 |
T |
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