View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11940_low_24 (Length: 428)
Name: NF11940_low_24
Description: NF11940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11940_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 97; Significance: 2e-47; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 288 - 405
Target Start/End: Original strand, 246150 - 246263
Alignment:
| Q |
288 |
agtttcaactttacaggaccatacataataatacaagtaatcaacgtcaaatcaaaataacagaacgcaactttcttacttaagagagttaaagaaactg |
387 |
Q |
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| T |
246150 |
agtttcaactttacaggaccata----ataatacaagtaatcaacatcaaatcaaaataacagaacgcaactttcttacttaagagagttaaagaaactg |
246245 |
T |
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| Q |
388 |
ttagaatgtgtatccggc |
405 |
Q |
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| T |
246246 |
ttagaatgtgtatccggc |
246263 |
T |
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Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 200 - 290
Target Start/End: Original strand, 230451 - 230540
Alignment:
| Q |
200 |
tggtggtgctgtctagttccatcttactatatatctttaacttttgaaatgtaaattcatagttaaattccgtttgattagtcttgtaagt |
290 |
Q |
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| T |
230451 |
tggtggtggtgtctagttccatcttattatatatctttaa-ttttgaaatataaattgatggttaaatttcgtttgattagttttgtaagt |
230540 |
T |
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Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 209 - 281
Target Start/End: Original strand, 233926 - 233998
Alignment:
| Q |
209 |
tgtctagttccatcttactatatatctttaacttttgaaatgtaaattcatagttaaattccgtttgattagt |
281 |
Q |
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| T |
233926 |
tgtctagttccatcttattctatatctttaacttctgaaatataaattgatagttaaatttcgtttgattagt |
233998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 230310 - 230381
Alignment:
| Q |
55 |
tggaatgcccgcccaccatgcgtttagcttcctaatttccatgtttagtttctattgggacgcgagaaaata |
126 |
Q |
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| T |
230310 |
tggaatgcccgcctactgtgcgtttagcttcctgttttccatgttttgtttgtattaggacgcgagaaaata |
230381 |
T |
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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 286 - 363
Target Start/End: Original strand, 230944 - 231017
Alignment:
| Q |
286 |
taagtttcaactttacaggaccatacataataatacaagtaatcaacgtcaaatcaaaataacagaacgcaactttct |
363 |
Q |
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| T |
230944 |
taagtttcaactttacaggaccata----ataatgcaagtagtcaacatcaaatcaaaataacataacacgactttct |
231017 |
T |
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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 286 - 372
Target Start/End: Original strand, 8060919 - 8060998
Alignment:
| Q |
286 |
taagtttcaactttacaggaccatacataataatacaagtaatcaacgtcaaatcaaaataacagaacgcaactttcttacttaaga |
372 |
Q |
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| T |
8060919 |
taagtttcaactttacaggaccata-------atacaagtagtcaacatcaaatcaaaataacagaacacaactttcttacataaga |
8060998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 194 - 268
Target Start/End: Original strand, 9352192 - 9352266
Alignment:
| Q |
194 |
caatactggtggtgctgtctagttccatcttactatatatctttaacttttgaaatgtaaattcatagttaaatt |
268 |
Q |
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| T |
9352192 |
caatactggtggtgatgtctagttccatcatattatatataattaacttttgaaatataaactgatagttaaatt |
9352266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 117
Target Start/End: Original strand, 18570256 - 18570307
Alignment:
| Q |
66 |
cccaccatgcgtttagcttcctaatttccatgtttagtttctattgggacgc |
117 |
Q |
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| T |
18570256 |
cccaccatgcgtttagcttcctaattttcatgctttgtttgtattaggacgc |
18570307 |
T |
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