View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11940_low_26 (Length: 425)
Name: NF11940_low_26
Description: NF11940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11940_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 19 - 395
Target Start/End: Complemental strand, 47590532 - 47590157
Alignment:
| Q |
19 |
gtactcttggatttttccaaaacgttacacaagtagtaacacttaattttccttcataaacattcaagggagttgaaggacacagtagaaaatatactac |
118 |
Q |
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| T |
47590532 |
gtactcttggatttttccaaaacgttacacaagtagtaacacttaattttccttcataaacattcaagg-agttgaaggacacagtagaaaatatactac |
47590434 |
T |
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| Q |
119 |
tacatcatatagactaagttataccacgtgtacaatttgcttttagtgacaaaaaactcacctcacccaaatttgaagaaaatccatatggtacttgtaa |
218 |
Q |
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| T |
47590433 |
tacatcatatagactaagttataccacgtgtacaatttgcttttagtgacaaaaaactcacctcacccaaatttgaagaaaatccatatggtacttgtaa |
47590334 |
T |
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| Q |
219 |
cacttatagggcccagtatagtaactagctcttaccatatgtgtgattttgtactgggaaaataatgtcacatttgggtaacactatgcttgggatccga |
318 |
Q |
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| T |
47590333 |
cacttatagggcccagtatagtaactagctcttaccatatgtgtgattttgtactgggaaaataatgtcacatttgggtaacactatgcttgggatccga |
47590234 |
T |
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| Q |
319 |
cactttttggcagatatctacctggcttactatattatgcaatgtacaggtagatacctttcaaatagtaaaaagtg |
395 |
Q |
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| T |
47590233 |
cactttttggcagatatctacctggcttactatattatgcaatgtacaggtagatacctttcaaatagtaaaaagtg |
47590157 |
T |
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