View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11940_low_27 (Length: 422)
Name: NF11940_low_27
Description: NF11940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11940_low_27 |
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| [»] chr3 (3 HSPs) |
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| [»] scaffold0150 (2 HSPs) |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 398; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 13 - 422
Target Start/End: Complemental strand, 42552386 - 42551977
Alignment:
| Q |
13 |
agataaacaatccaaacttcatgcaacaaagcattgtagtgaaaatttgagcaacgacaaaggtgcaaatcatgttaacagagacattaatgctttgagc |
112 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42552386 |
agataaacaatccaaacttcatgtaacaaagcattgtagtgaaaatttgagcaatgacaaaggtgcaaatcatgttaacagagacattaatgctttgagc |
42552287 |
T |
|
| Q |
113 |
agccgaacgaatttcaagcggaaaaatctcactaggcaccaaccaacttagaggaccccaagaccatgcaaatcctacaacatacacacaaatacacatg |
212 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42552286 |
agcagaacgaatttcaagcggaaaaatctcactaggcaccaaccaacttagaggaccccaagaccatgcaaatcctacaacatacacacaaatacacatg |
42552187 |
T |
|
| Q |
213 |
acaaccacaatagcataccactttgacagagtgtctgggtcaccatcaactccaaacttacaagcaatagctatagctataacaatctacaaacaaaatt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42552186 |
acaaccacaatagcataccactttgacagagtgtctgggtcaccatcaactccaaacttacaagcaatagctatagctataacaatctacaaacaaaatt |
42552087 |
T |
|
| Q |
313 |
caaatttaattagtaacaagtaaactttacagttcaatatagtgtgtatgtatgtattgcaaataattttgttaaacaaacctgacaaatgaacatttga |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42552086 |
caaatttaattagtaacaagtaaactttacagttcaatatagtgtgtatgtatgtattgcaaataattttgttaaacaaacctgacaaatgaacatttga |
42551987 |
T |
|
| Q |
413 |
atacctcctt |
422 |
Q |
| |
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|||||||||| |
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| T |
42551986 |
atacctcctt |
42551977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 51 - 187
Target Start/End: Original strand, 1238972 - 1239108
Alignment:
| Q |
51 |
gtgaaaatttgagcaacgacaaaggtgcaaatcatgttaacagagacattaatgctttgagcagccgaacgaatttcaagcggaaaaatctcactaggca |
150 |
Q |
| |
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||||||| |||||||| | |||| ||| ||||||||||||| || ||||| | |||||||| || || |||| ||||| |||||||| ||||| |||| |
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| T |
1238972 |
gtgaaaacttgagcaatggcaaatgtgaaaatcatgttaaccgaaacattgacactttgagccgctgatcgaacctcaagtggaaaaatttcacttggca |
1239071 |
T |
|
| Q |
151 |
ccaaccaacttagaggaccccaagaccatgcaaatcc |
187 |
Q |
| |
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||||||| | |||||||||||||||||||| ||||| |
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| T |
1239072 |
ccaaccatccaagaggaccccaagaccatgcgaatcc |
1239108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 51 - 184
Target Start/End: Original strand, 42517591 - 42517724
Alignment:
| Q |
51 |
gtgaaaatttgagcaacgacaaaggtgcaaatcatgttaacagagacattaatgctttgagcagccgaacgaatttcaagcggaaaaatctcactaggca |
150 |
Q |
| |
|
||||||| |||||||| | |||| ||| |||||||||||||||| ||||| | |||||||| || || || | ||||| || ||||| ||||| |||| |
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| T |
42517591 |
gtgaaaacttgagcaatggcaaatgtgaaaatcatgttaacagaaacattgacactttgagctgctgatcgcacctcaagtgggaaaatttcacttggca |
42517690 |
T |
|
| Q |
151 |
ccaaccaacttagaggaccccaagaccatgcaaa |
184 |
Q |
| |
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||||||| | ||||||||||||||||||||||| |
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| T |
42517691 |
ccaaccatccaagaggaccccaagaccatgcaaa |
42517724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 13 - 315
Target Start/End: Original strand, 18233827 - 18234129
Alignment:
| Q |
13 |
agataaacaatccaaacttcatgcaacaaagcattgtagtgaaaatttgagcaacgacaaaggtgcaaatcatgttaacagagacattaatgctttgagc |
112 |
Q |
| |
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||||||| ||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| || |||||||| |
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| T |
18233827 |
agataaataatccaaacttcatgtgacaaagcattgtagtgaaaatttgagcaatgataaaggtgcaaatcatgttaacagagacattgatactttgagc |
18233926 |
T |
|
| Q |
113 |
agccgaacgaatttcaagcggaaaaatctcactaggcaccaaccaacttagaggaccccaagaccatgcaaatcctacaacatacacacaaatacacatg |
212 |
Q |
| |
|
|| ||||||| ||| || || || || ||||| ||||||||||||| |||||||||||||||||||||||||||| | || ||||||||||| ||||| |
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| T |
18233927 |
cgcagaacgaacttcgagtgggaatatttcacttggcaccaaccaacctagaggaccccaagaccatgcaaatcctgctacgtacacacaaatgcacata |
18234026 |
T |
|
| Q |
213 |
acaaccacaatagcataccactttgacagagtgtctgggtcaccatcaactccaaacttacaagcaatagctatagctataacaatctacaaacaaaatt |
312 |
Q |
| |
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||||| ||||| ||||||||||||| || | | ||||||||||| |||||||| ||| |||||| ||||||||||||||||| ||||||||||| |
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| T |
18234027 |
acaacaacaattgcataccactttggcaaaacgcctgggtcaccacttactccaaatttaagcgcaataaatatagctataacaatctgcaaacaaaatt |
18234126 |
T |
|
| Q |
313 |
caa |
315 |
Q |
| |
|
||| |
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|
| T |
18234127 |
caa |
18234129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 51 - 180
Target Start/End: Original strand, 41971478 - 41971607
Alignment:
| Q |
51 |
gtgaaaatttgagcaacgacaaaggtgcaaatcatgttaacagagacattaatgctttgagcagccgaacgaatttcaagcggaaaaatctcactaggca |
150 |
Q |
| |
|
||||||| | |||||| | |||| ||| ||||||||||||| || ||||| | |||||||| || || || | ||||| |||||| | ||||| |||| |
|
|
| T |
41971478 |
gtgaaaactcgagcaatggcaaatgtgaaaatcatgttaaccgaaacattgacactttgagccgctgatcgcacctcaagtggaaaagtttcacttggca |
41971577 |
T |
|
| Q |
151 |
ccaaccaacttagaggaccccaagaccatg |
180 |
Q |
| |
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||||||| | ||||||||||||||||||| |
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| T |
41971578 |
ccaaccatccaagaggaccccaagaccatg |
41971607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 36202868 - 36202698
Alignment:
| Q |
18 |
aacaatccaaacttcatgcaacaaagcattgtagtgaaaatttgagcaacgacaaaggtgcaaatcatgttaacagagacattaatgctttgagcagccg |
117 |
Q |
| |
|
||||| |||||||||||| |||||||||| | ||||| ||| ||||| | |||||| ||| |||||| ||||| || || | |||||||| || | |
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|
| T |
36202868 |
aacaaaccaaacttcatgtgacaaagcattatcaagaaaacttgtgcaactaagaaggtgaaaagcatgttcacagatacgtttacactttgagctgcag |
36202769 |
T |
|
| Q |
118 |
aacgaatttcaagcggaaaaatctcactaggcaccaaccaacttagaggaccccaagaccatgcaaatcct |
188 |
Q |
| |
|
||||||| || | || |||||||||||||| |||||||||| ||||||||||| ||||| ||||||||| |
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|
| T |
36202768 |
aacgaatctccaatgggaaaatctcactaggaaccaaccaaccaagaggaccccatgaccaagcaaatcct |
36202698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 178
Target Start/End: Original strand, 35922174 - 35922339
Alignment:
| Q |
13 |
agataaacaatccaaacttcatgcaacaaagcattgtagtgaaaatttgagcaacgacaaaggtgcaaatcatgttaacagagacattaatgctttgagc |
112 |
Q |
| |
|
|||||||||| |||||||||||| ||| |||| || ||||| ||| ||||| | || ||| ||| |||||| ||||| ||||| | |||||||| |
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| T |
35922174 |
agataaacaagccaaacttcatgtgacagagcagggttaagaaaacttgtgcaacaaagaatgtgaaaaacatgttcacagatacattgacactttgagc |
35922273 |
T |
|
| Q |
113 |
agccgaacgaatttcaagcggaaaaatctcactaggcaccaaccaacttagaggaccccaagacca |
178 |
Q |
| |
|
|||||| ||||| || | ||||| |||||||| | ||||||||||| ||||||||||| ||||| |
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|
| T |
35922274 |
agccgatcgaatctccaatggaaagatctcacttgtcaccaaccaaccaagaggaccccatgacca |
35922339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0150 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0150
Description:
Target: scaffold0150; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 322
Target Start/End: Original strand, 1473 - 1505
Alignment:
| Q |
290 |
tataacaatctacaaacaaaattcaaatttaat |
322 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
1473 |
tataacaatctacaaacaaaattcaaatttaat |
1505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0150; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 322
Target Start/End: Original strand, 16639 - 16671
Alignment:
| Q |
290 |
tataacaatctacaaacaaaattcaaatttaat |
322 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
16639 |
tataacaatctacaaacaaaattcaaatttaat |
16671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 322
Target Start/End: Original strand, 30866226 - 30866258
Alignment:
| Q |
290 |
tataacaatctacaaacaaaattcaaatttaat |
322 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
30866226 |
tataacaatctacaaacaaaattcaaatttaat |
30866258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 322
Target Start/End: Complemental strand, 131503 - 131471
Alignment:
| Q |
290 |
tataacaatctacaaacaaaattcaaatttaat |
322 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |
|
|
| T |
131503 |
tataacaatctgcaaacaaaattcaaatttaat |
131471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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