View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11940_low_31 (Length: 401)
Name: NF11940_low_31
Description: NF11940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11940_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 6432132 - 6432513
Alignment:
| Q |
1 |
gtgttcctcctagtccttctcattttctaccttttgatactactaggtgtcgtcttaatggatatggttatgaccatgtcaatgacgatgttaagatcat |
100 |
Q |
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| T |
6432132 |
gtgttcctcctagtccttctcagtttgtaccttttgatactactaggtgtcgtcttaatggatatggttatgaccatgtcaatgacgatgttaagatcat |
6432231 |
T |
|
| Q |
101 |
tcgacattttaatgttagtaaatattaccatgatgatgatgatgaatttgactggcctgatctgccagcaacaccgagatctttttgggaggtttacaac |
200 |
Q |
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| T |
6432232 |
tcgacattttaatgttagtaaatattaccatga---tgatgatgaatttgactggcctgatctgccagcaacaccgagatctttttgggaggtttacaac |
6432328 |
T |
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| Q |
201 |
gtaagaagtggctcttggaagaaacttgattatgatatggatattcccagaggtgtaagacgtaatgtgtacttggatggggtgtgtcattggtttgcag |
300 |
Q |
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| T |
6432329 |
gtaagaagtggctcttggaagaaacttgattatgatatggatattcccagaggtgtaagacgtaatgtgtacttggatggggtgtgtcattggtttgcag |
6432428 |
T |
|
| Q |
301 |
atgatgaaaaatatatggtttcgtttaacttgagcagtgaagtgttttctactacactcttaccttttgatatggaagatagttat |
386 |
Q |
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| T |
6432429 |
at-atgaaaaatatatggtttcgtttaacttgagcagtgaagtgttttctactaaactcttaccttttgatatggaagatagttat |
6432513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 315 - 393
Target Start/End: Original strand, 26532183 - 26532261
Alignment:
| Q |
315 |
atggtttcgtttaacttgagcagtgaagtgttttctactacactcttaccttttgatatggaagatagttatgatgatg |
393 |
Q |
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| T |
26532183 |
atggtttcttttaacttgagcactgagatgttttctactacactgttacccttggatatgcaagatagatatcatgatg |
26532261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 2 - 105
Target Start/End: Original strand, 1326768 - 1326871
Alignment:
| Q |
2 |
tgttcctcctagtccttctcattttctaccttttgatactactaggtgtcgtcttaatggatatggttatgaccatgtcaatgacgatgttaagatcatt |
101 |
Q |
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||||||| ||||| | |||| ||| |||||||| ||||| | ||| || |||| |||||||||||||||||| ||| |||||||| |||||||||| |
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| T |
1326768 |
tgttccttctagttcggctcagtttttaccttttaatactgtttggtttcatcttcatggatatggttatgaccctgttaatgacgactataagatcatt |
1326867 |
T |
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| Q |
102 |
cgac |
105 |
Q |
| |
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|||| |
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| T |
1326868 |
cgac |
1326871 |
T |
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