View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11940_low_35 (Length: 365)
Name: NF11940_low_35
Description: NF11940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11940_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 8 - 349
Target Start/End: Complemental strand, 40546546 - 40546213
Alignment:
| Q |
8 |
gagaagcagagaagaaaaaactcgagtgaaaatactaaagggagataaaatagcgacaacgggttaaaataggcttgaatagggttggataagaatatgc |
107 |
Q |
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|||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40546546 |
gagatgcagggaagaaaaaacttgagtgaaaatactaaagggagataaaatagcgacaacgggttaaaataggcttgaatagggttggataagaatatgc |
40546447 |
T |
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| Q |
108 |
atctgctagtaaggaagcagataagttacaaccaacaaagtcacaaaaattgcttttaagacaaatataagttactgccaaccaagttattgtgaagaat |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40546446 |
atctgctagtaaggaagcagataagttacaaccaacaaagtcacaaaaattgcttttaagacaaatataagttactgccaaccaagttattgtgcagaat |
40546347 |
T |
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| Q |
208 |
aacagtttgagccggtgcnnnnnnngttgcataaaaaccatcttcaacctaccaagacagattagtatatggatcnnnnnnnnnnnnnnnnnnncatgga |
307 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
40546346 |
aacagtttgagccggtgcaaaaaaggttgcataaaaaccatcttcaacctaccaagacagattagtatatgaatc--------tatatatatatcatgga |
40546255 |
T |
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| Q |
308 |
aaatttgagaactatatcattcaaataagtcagccaaatatt |
349 |
Q |
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| T |
40546254 |
aaatttgagaactatatcattcaaataagtcagccaaatatt |
40546213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 31790894 - 31790848
Alignment:
| Q |
235 |
tgcataaaaaccatcttcaacctaccaagacagattagtatatggat |
281 |
Q |
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| T |
31790894 |
tgcataaaaactgccttcaacctaccaagacagattagtatatggat |
31790848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 304 - 347
Target Start/End: Complemental strand, 31790835 - 31790792
Alignment:
| Q |
304 |
tggaaaatttgagaactatatcattcaaataagtcagccaaata |
347 |
Q |
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|||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
31790835 |
tggaaaatatgagaactatatcattcaaacgagtcagccaaata |
31790792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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