View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11940_low_39 (Length: 340)
Name: NF11940_low_39
Description: NF11940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11940_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 9105549 - 9105233
Alignment:
| Q |
1 |
cagcctaccgaaaatagagtcaacacactcgtgagtgcatcaggtcctccacaaactgagaaaattaccgagcctaccaaaaagagagttagaggtgcaa |
100 |
Q |
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| T |
9105549 |
cagcctaccgaaaatagagtcaacacactcgtgagtgcatcaggtcctccacaaactgagaaaattaccgagcctaccaaaaagagagttagaggtgcaa |
9105450 |
T |
|
| Q |
101 |
cgcgaatggcacattttttgcttaaacgtttgaatggtgaaaagattccgattgacttcgatcaatataccaaaaagcctttaggggaaaacagnnnnnn |
200 |
Q |
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| T |
9105449 |
cgcgaatggcacattttttgcttaaacgtttgaatggtgaaaagattctgattgactttgatcaatataccaaaaagcctttaggggaaaactgaaaaaa |
9105350 |
T |
|
| Q |
201 |
nttcaaaagtcatgtgggttacattgctagaagcaaagtcagtattttggtggataattgggatcttgtaagcgtgactgtcaaagacaagatttgggaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9105349 |
attcaaaagtcatgtgggttacattgctagaagcaaagtcagtattttggtggataattgggatcttgtaagcgtgactgtcaaagacaagatttgggaa |
9105250 |
T |
|
| Q |
301 |
gatatcatggtaatact |
317 |
Q |
| |
|
||||||||||||||||| |
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| T |
9105249 |
gatatcatggtaatact |
9105233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 135 - 317
Target Start/End: Complemental strand, 22819880 - 22819698
Alignment:
| Q |
135 |
tggtgaaaagattccgattgacttcgatcaatataccaaaaagcctttaggggaaaacagnnnnnnn-ttcaaaagtcatgtgggttacattgctagaag |
233 |
Q |
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| T |
22819880 |
tggtgaaaggataccgattgaattcgatgtatgaaccaaaacgcctttaggggaatacagaagaaaaattcaaaagtcatgtgggttccattgctagaag |
22819781 |
T |
|
| Q |
234 |
caaagtcagtattttggtggataattgggatcttgtaagcgtgactgtcaaagacaagatttgggaagatatcatggtaatact |
317 |
Q |
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| T |
22819780 |
caaagttagtattttggtgaatcattgggatcttataagcg-gactattaaagaccagatttgagaagatatcatggtattact |
22819698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 233 - 317
Target Start/End: Original strand, 41076322 - 41076406
Alignment:
| Q |
233 |
gcaaagtcagtattttggtggataattgggatcttgtaagcgtgactgtcaaagacaagatttgggaagatatcatggtaatact |
317 |
Q |
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|||||||||||||||| |||||| |||||||||||||||||| |||||| |||||| |||||| ||||||||||||||||||||| |
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| T |
41076322 |
gcaaagtcagtatttttgtggatcattgggatcttgtaagcgagactgttaaagaccagatttaggaagatatcatggtaatact |
41076406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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