View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11940_low_43 (Length: 297)
Name: NF11940_low_43
Description: NF11940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11940_low_43 |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 1e-90; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 102 - 282
Target Start/End: Complemental strand, 531252 - 531072
Alignment:
| Q |
102 |
cttcatcaattttcttcatacccattatcgatcatcattttcctctttatatgcacattccaagcttccttggttttaggatcgttagccgcatgtccat |
201 |
Q |
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| T |
531252 |
cttcatcaattttcttcatacccattatcgatcatcattttcctctttatatgcacattccaagcttccttgattttaggatcgttagccgcatgtccat |
531153 |
T |
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| Q |
202 |
ttgccaaaaccaattatatcaagcttctttgtattttcaaattaaaaaatggatatgcaccttcttcttttctgttgctgt |
282 |
Q |
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| T |
531152 |
ttgccaaaaccaattatatcaagcttctttgtatttttcaattaaaaaatggatatgcaccttcttcttttctgttgctgt |
531072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 102 - 282
Target Start/End: Complemental strand, 564207 - 564027
Alignment:
| Q |
102 |
cttcatcaattttcttcatacccattatcgatcatcattttcctctttatatgcacattccaagcttccttggttttaggatcgttagccgcatgtccat |
201 |
Q |
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| T |
564207 |
cttcatcaattttcttcatacccattatcgatcatcattttcctctttatatgcacattccaagcttccttgattttaggatcgttagccgcatgtccat |
564108 |
T |
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| Q |
202 |
ttgccaaaaccaattatatcaagcttctttgtattttcaaattaaaaaatggatatgcaccttcttcttttctgttgctgt |
282 |
Q |
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| T |
564107 |
ttgccaaaaccaattatatcaagcttctttgtatttttcaattaaaaaatggatatgcaccttcttcttttctgttgctgt |
564027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 564308 - 564267
Alignment:
| Q |
1 |
aaatttgtatatgagaacccaattagatttggtgttcttagt |
42 |
Q |
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| T |
564308 |
aaatttgtatatgagaacccaattagatttggtgttcttagt |
564267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 531353 - 531311
Alignment:
| Q |
1 |
aaatttgtatatgagaacccaattagatttggtgttcttagta |
43 |
Q |
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| T |
531353 |
aaatttgtatatgacaacccaattagatttggtgtccttagta |
531311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 103 - 203
Target Start/End: Original strand, 32848033 - 32848131
Alignment:
| Q |
103 |
ttcatcaattttcttcatacccattatcgatcatcattttcctctttatatgcacattccaagcttccttggttttaggatcgttagccgcatgtccatt |
202 |
Q |
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| T |
32848033 |
ttcatcaattttcttgatacccattattgatcatcattt--ctctatttatgcacaatccaaacttccttgattttaggatcatgagccacatgttcatt |
32848130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 218
Target Start/End: Complemental strand, 34272402 - 34272289
Alignment:
| Q |
103 |
ttcatcaattttcttcatacccattatcgatcatcattttcctctttatatgcacattccaagcttccttggttttaggatcgttagccgcatgtccatt |
202 |
Q |
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||||||||||||||||||||||||||| | |||||||| || ||||| ||||| || |||| |||||| |||||||||| ||| | |||||||||| |
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| T |
34272402 |
ttcatcaattttcttcatacccattattatttatcatttttctatttat--gcacaatctaagcatccttgattttaggatcactagtcacatgtccatt |
34272305 |
T |
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| Q |
203 |
tgccaaaaccaattat |
218 |
Q |
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| T |
34272304 |
tacctaaaccaattat |
34272289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 183
Target Start/End: Complemental strand, 49138212 - 49138139
Alignment:
| Q |
107 |
tcaattttcttcatacccattatcgatcatcattttcctctttatatgcacattccaagcttccttggttttaggat |
183 |
Q |
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| T |
49138212 |
tcaattttcttcatacccattattgat-atcattttcctatt--tatgtacaatccaagcttcctttattttaggat |
49138139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 220
Target Start/End: Original strand, 32471249 - 32471336
Alignment:
| Q |
131 |
gatcatcattttcctctttatatgcacattccaagcttccttggttttaggatcgttagccgcatgtccatttgccaaaaccaattatat |
220 |
Q |
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| T |
32471249 |
gatcatcattt--ctctatttatgcacaatccaagcttccttgattttaggatcactaactacatgtccatttgcctcaaccaataatat |
32471336 |
T |
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