View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11940_low_44 (Length: 256)
Name: NF11940_low_44
Description: NF11940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11940_low_44 |
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Alignment Details
Target: chr7 (Bit Score: 92; Significance: 9e-45; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 132 - 239
Target Start/End: Complemental strand, 18216350 - 18216243
Alignment:
| Q |
132 |
gatcatagttaaaagatcgcgtagcatatcaaatttatttttcacaatcacaattgatgcaataatatttttcacttacaacagaggttatatttcaggg |
231 |
Q |
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| T |
18216350 |
gatcatggttaaaagatcgcgcagcatgtcaaatttatttttcacaatcactattgatgcaataatatttttcacttacaacagaggttatatttcaggg |
18216251 |
T |
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| Q |
232 |
accaagat |
239 |
Q |
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|||||||| |
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| T |
18216250 |
accaagat |
18216243 |
T |
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Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 18216598 - 18216544
Alignment:
| Q |
11 |
caaaggcaaaatgaataaacacaaatacacacatataaacttgcaaatattattg |
65 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18216598 |
caaaggcaaaatgaataaacacaaatacacacatataaacttgcaaatattattg |
18216544 |
T |
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