View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11940_low_46 (Length: 252)
Name: NF11940_low_46
Description: NF11940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11940_low_46 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 11 - 252
Target Start/End: Complemental strand, 564835 - 564594
Alignment:
| Q |
11 |
cagagacttaggaataattggcaaactccgtgatcaaatcttgtgtgttctttgtgtgcannnnnnnnnnnnnnnnnnnnnnnnnaactagatctgttgt |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||| |
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| T |
564835 |
cagagacttaggaataattggcaaactccgtgatcaaatctcgtgtgttctttgtttgcatttttgtagttttatttttctttttaactagatctgttgt |
564736 |
T |
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| Q |
111 |
tctaatagcattgttgaagaactaaactgatgatagaaatatttcatgtaacaaactgatagaaactaatttaatatgtaagtctaagcttgaataattg |
210 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
564735 |
tctaatagcattggtgaagaactaaactgatgatagaaatatttcctgtaacaaactgatagaaactaatttaatatgtaagtctaagcttgaataattg |
564636 |
T |
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| Q |
211 |
aagaactatattgtgaaagcaagaaggtgagtcgttcttgat |
252 |
Q |
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| T |
564635 |
aagaactaaattgtgaaagcaagaaggtgagtcgttcttgat |
564594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 11 - 249
Target Start/End: Complemental strand, 532254 - 532016
Alignment:
| Q |
11 |
cagagacttaggaataattggcaaactccgtgatcaaatcttgtgtgttctttgtgtgcannnnnnnnnnnnnnnnnnnnnnnnnaactagatctgttgt |
110 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||| |||||||| |
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| T |
532254 |
cagagacttaggaataattggcaaactccttgatcaaatcttgtgtgttctttgtttgcatttttgtagttttttttttctttttaactaggtctgttgt |
532155 |
T |
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| Q |
111 |
tctaatagcattgttgaagaactaaactgatgatagaaatatttcatgtaacaaactgatagaaactaatttaatatgtaagtctaagcttgaataattg |
210 |
Q |
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||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
532154 |
tctaatagcattgttgaagaactaaactgatcatagaattatttcatgtaacaaactgatagaaactgatttaatatgtaagtctaagattgaataattg |
532055 |
T |
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| Q |
211 |
aagaactatattgtgaaagcaagaaggtgagtcgttctt |
249 |
Q |
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| T |
532054 |
aagaactaaattgtgaaagaaagaaggtgcgtcgttctt |
532016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 22746716 - 22746674
Alignment:
| Q |
24 |
ataattgg-caaactccgtgatcaaatcttgtgtgttctttgt |
65 |
Q |
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|||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
22746716 |
ataattggtcaaactccgtgatcaaatcttgtgtgttatttgt |
22746674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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