View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11940_low_47 (Length: 252)
Name: NF11940_low_47
Description: NF11940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11940_low_47 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 13 - 252
Target Start/End: Original strand, 11054961 - 11055199
Alignment:
| Q |
13 |
gagaataatggtaacgatgattagctacaactttttacgtcgacctttttcacgatatcataccgnnnnnnnaaaaccttgataatagtgatcttcccaa |
112 |
Q |
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| T |
11054961 |
gagaataatggtaacgacgattagctacaactttttacctcgacctttttcatgatatcatacc-attttttaaaaccttgataatagtgatcttcccaa |
11055059 |
T |
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| Q |
113 |
attcaataaatctccatatgagacattaatcaaatcaagaaattccagaaccctgaaaataccaaaatctcaaattaagaaatcaaaggatttgagagat |
212 |
Q |
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| T |
11055060 |
attcaaaaaatctccatatgagacatcaatcaaatcaagaaattccagaaccctgaaaataccaaaatctcaaattaagaaatcaaaggatttgagagat |
11055159 |
T |
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| Q |
213 |
gggtttagacaagagtgatggtggcgtgtctggaaaacca |
252 |
Q |
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| T |
11055160 |
gggtttagacaagagtgatggtggcgtgtctggaaaacca |
11055199 |
T |
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Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 85 - 207
Target Start/End: Original strand, 11074328 - 11074450
Alignment:
| Q |
85 |
aaaaccttgataatagtgatcttcccaaattcaataaatctccatatgagacattaatcaaatcaagaaattccagaaccctgaaaataccaaaatctca |
184 |
Q |
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||||||||||||| || |||||||| |||||||| | ||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||| | |
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| T |
11074328 |
aaaaccttgataacagagatcttccgaaattcaaaatatctccatatgagacatcaatcaaaacaagaaattccagaacccagaaaataccaaaataaaa |
11074427 |
T |
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| Q |
185 |
aattaagaaatcaaaggatttga |
207 |
Q |
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| T |
11074428 |
aattaagaaatcaaaggatttga |
11074450 |
T |
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