View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11940_low_49 (Length: 241)
Name: NF11940_low_49
Description: NF11940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11940_low_49 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 42551935 - 42551712
Alignment:
| Q |
1 |
attgaaacaagagtggcgagtgcattacaacctccaataattaaggctgacacgagagaagcagtgttactaaagccaatagtcttaaacaaaacagggg |
100 |
Q |
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| T |
42551935 |
attgaaacaagagtggcgagtgcattacaacctccaataattaaggctgacacgagagaagcagtgttactaaagccaatagtcttaaacaaaacagggg |
42551836 |
T |
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| Q |
101 |
cataaaatgtaatcacattcatgccagtgagttgctggaagaagggaatggctattgccattgtgaggtgaggtctatattgtctcttcaacaaagagac |
200 |
Q |
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| T |
42551835 |
cataaaatgtaatcacattcatgccagtgagttgctggaagaagggaatggctattgccattgtgaggtgaggtctatattgtctcttcaacaaagagac |
42551736 |
T |
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| Q |
201 |
ccaagggtgtttcacagtttttga |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
42551735 |
ccaagggtgtttcacagtttttga |
42551712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 79 - 208
Target Start/End: Original strand, 1239876 - 1240005
Alignment:
| Q |
79 |
atagtcttaaacaaaacaggggcataaaatgtaatcacattcatgccagtgagttgctggaagaagggaatggctattgccattgtgaggtgaggtctat |
178 |
Q |
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| T |
1239876 |
atagttttaaacaaaactggagcataaaatgtgatgacattcatgccagtgagttgctggaataatggaatagctatggccatggtaagttgaggcctat |
1239975 |
T |
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| Q |
179 |
attgtctcttcaacaaagagacccaagggt |
208 |
Q |
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| T |
1239976 |
actgcctcgtcaacaaacaagcccaagggt |
1240005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 79 - 195
Target Start/End: Original strand, 42518198 - 42518314
Alignment:
| Q |
79 |
atagtcttaaacaaaacaggggcataaaatgtaatcacattcatgccagtgagttgctggaagaagggaatggctattgccattgtgaggtgaggtctat |
178 |
Q |
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| T |
42518198 |
atagttttaaacaaaaccggagcataaaatgtgatgacattcatgccagtgagttgctggaagaatggaatagctgtggccatggtaagctgaggcctat |
42518297 |
T |
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| Q |
179 |
attgtctcttcaacaaa |
195 |
Q |
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| T |
42518298 |
actgcctcgtcaacaaa |
42518314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 12 - 224
Target Start/End: Original strand, 18234285 - 18234497
Alignment:
| Q |
12 |
agtggcgagtgcattacaacctccaataattaaggctgacacgagagaagcagtgttactaaagccaatagtcttaaacaaaacaggggcataaaatgta |
111 |
Q |
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|||||| ||||| ||||| ||||| |||| | |||||||| ||||||||| || | ||||| ||||||||||| ||||||||||| ||||| |||||| |
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| T |
18234285 |
agtggcaagtgcgttacatcctccggtaatcagggctgacatgagagaagcgttgctgctaaacccaatagtcttgaacaaaacaggagcatagaatgta |
18234384 |
T |
|
| Q |
112 |
atcacattcatgccagtgagttgctggaagaagggaatggctattgccattgtgaggtgaggtctatattgtctcttcaacaaagagacccaagggtgtt |
211 |
Q |
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|||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||| |||| |
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| T |
18234385 |
atcacattcatgccggtgagttgctgaaagaacggaatggctattgccattgtgagatgaggtctatacggtctcgtcaacaaagaggcccaaggatgtt |
18234484 |
T |
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| Q |
212 |
tcacagtttttga |
224 |
Q |
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|||||||||||| |
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| T |
18234485 |
ccacagtttttga |
18234497 |
T |
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