View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11940_low_51 (Length: 239)
Name: NF11940_low_51
Description: NF11940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11940_low_51 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 28232161 - 28232375
Alignment:
| Q |
1 |
ataggtaatcagctgccaagtgagtggataacaattatgtttaatgtattctaattttaataatgtctgaatttgggcaatatatatgtatgtccttcaa |
100 |
Q |
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| T |
28232161 |
ataggtaatcagctgccaagtgagtggataacaattgtgtttaatgtattctaattttaataatgtctgaatttgggcaatatatatgtatgtccttcaa |
28232260 |
T |
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| Q |
101 |
acagataggaggtatccatgtttcttgttttatgctctttgattatataaatatgcctatgttgtctctccttgtgacattttcttgaaagcctgaatca |
200 |
Q |
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| T |
28232261 |
acagataggaggtatccatgtttcttgttttatgctctttgattatataaatatgcctatgttgtctctccttgtgacattttcttgaaagcctgaatca |
28232360 |
T |
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| Q |
201 |
gttatagcattgtag |
215 |
Q |
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||||||||||||||| |
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| T |
28232361 |
gttatagcattgtag |
28232375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 104 - 215
Target Start/End: Original strand, 28239904 - 28240010
Alignment:
| Q |
104 |
gataggaggtatccatgtttcttgttttatgctctttgattatataaatatgcctatg-ttgtctctccttgtgacattttcttgaaagcctgaatcagt |
202 |
Q |
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| T |
28239904 |
gataggagatactcatgtttcttgttttatgctctttgattatataaatatgcctatgattgt------ttgtgacattttcttgaaagtctgaatcaat |
28239997 |
T |
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| Q |
203 |
tatagcattgtag |
215 |
Q |
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| T |
28239998 |
tatagcattgtag |
28240010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 117 - 223
Target Start/End: Original strand, 47569838 - 47569945
Alignment:
| Q |
117 |
catgtttcttgttttatgctctttgattatataaatatgcctatg-ttgtctctccttgtgacattttcttgaaagcctgaatcagttatagcattgtag |
215 |
Q |
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| T |
47569838 |
catgtttcttattttatgctctttgattatataaatacgcctatgattgtcttggcttgttacattttcttgaaagcctgaaccatttttagcattgtag |
47569937 |
T |
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| Q |
216 |
cttgcaat |
223 |
Q |
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||||||| |
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| T |
47569938 |
tttgcaat |
47569945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 120 - 223
Target Start/End: Complemental strand, 24621130 - 24621026
Alignment:
| Q |
120 |
gtttcttgttttatgctctttgattatataaatatgcctatg-ttgtctctccttgtgacattttcttgaaagcctgaatcagttatagcattgtagctt |
218 |
Q |
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| T |
24621130 |
gtttcttattttatgctctttgattataaaaatacgcctttgattgtcttggcttgtgacattttcttgaaagcctgaatcaattttagcattctagttt |
24621031 |
T |
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| Q |
219 |
gcaat |
223 |
Q |
| |
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||||| |
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| T |
24621030 |
gcaat |
24621026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 171 - 213
Target Start/End: Complemental strand, 21158434 - 21158392
Alignment:
| Q |
171 |
cttgtgacattttcttgaaagcctgaatcagttatagcattgt |
213 |
Q |
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| T |
21158434 |
cttgtgacattttcttgaaagcctgaatcaattatagcattgt |
21158392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 146
Target Start/End: Original strand, 28327020 - 28327072
Alignment:
| Q |
91 |
tgtccttcaaacagataggaggtatccatgtttcttgttttatgctctttgattat |
146 |
Q |
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| T |
28327020 |
tgtccttcaaacagatagg---tacacatgtttcttgttttatgctctttgattat |
28327072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 28327085 - 28327133
Alignment:
| Q |
175 |
tgacattttcttgaaagcctgaatcagttatagcattgtagcttgcaat |
223 |
Q |
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| T |
28327085 |
tgacattttcttgaaagcctgaatcaattctagcattgttgtttgcaat |
28327133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 1637698 - 1637750
Alignment:
| Q |
171 |
cttgtgacattttcttgaaagcctgaatcagttatagcattgtagcttgcaat |
223 |
Q |
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| T |
1637698 |
cttgtgacattttcttgaaagcctgaatcaattatataattgttgtttgcaat |
1637750 |
T |
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