View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11940_low_52 (Length: 231)
Name: NF11940_low_52
Description: NF11940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11940_low_52 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 9e-97; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 28231809 - 28231999
Alignment:
| Q |
18 |
aggtggatcaagaagtgttgtcatggataagattgcacaaaaggtcgaaacgttgctactttccaaacctagcatgcttactgttaattatgattgaaca |
117 |
Q |
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| T |
28231809 |
aggtggatcaagaagtgttgtcatggataagattgcacaaaaggtcgaaacgttgctactttccaaacctagcatgcttactgttaattatgattgaaca |
28231908 |
T |
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| Q |
118 |
ac-aacaaactatttaaagtgggcgtgtttggtgaaacatcgaaagacaagttggttgcattctagttgatgatgctgaaacaataaggag |
207 |
Q |
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| T |
28231909 |
acaaacaaactatttaaagtgggcgtgtttggtgaaacatccaaagacaagttggttgcattctagttgatgatgctgaaacaataaggag |
28231999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 105 - 191
Target Start/End: Original strand, 28239592 - 28239678
Alignment:
| Q |
105 |
ttatgattgaacaacaacaaactatttaaagtgggcgtgtttggtgaaacatcgaaagacaagttggttgcattctagttgatgatg |
191 |
Q |
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| T |
28239592 |
ttatgattgaactacaacaaactatttatagtgggattgtttggtaaaacatcgaaagacaagttggttgtgttccagttgatgatg |
28239678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 106 - 152
Target Start/End: Original strand, 47569524 - 47569570
Alignment:
| Q |
106 |
tatgattgaacaacaacaaactatttaaagtgggcgtgtttggtgaa |
152 |
Q |
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| T |
47569524 |
tatgattgaacaacaacaaactatttaaagtgggcttgtttggtgaa |
47569570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 138
Target Start/End: Complemental strand, 24621454 - 24621422
Alignment:
| Q |
106 |
tatgattgaacaacaacaaactatttaaagtgg |
138 |
Q |
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| T |
24621454 |
tatgattgaacaacaacaaactatttaaagtgg |
24621422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 152
Target Start/End: Original strand, 16375582 - 16375628
Alignment:
| Q |
106 |
tatgattgaacaacaacaaactatttaaagtgggcgtgtttggtgaa |
152 |
Q |
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| T |
16375582 |
tatgattgaacaataaaaaactatttaaagtgagcttgtttggtgaa |
16375628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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