View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11940_low_53 (Length: 229)
Name: NF11940_low_53
Description: NF11940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11940_low_53 |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0128 (1 HSPs) |
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| [»] scaffold0113 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 2510813 - 2510586
Alignment:
| Q |
1 |
tcacatttaccacaatcattttcatggattctgaacataaactcatacccaataacatttagagcacataggttatggaatcaccaacaatcaacaataa |
100 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2510813 |
tcacatttaccacaatcattttcatggattctcaacataaactcatacc-aataacatttagagcacataggttatggaatcactaacaatcaacaataa |
2510715 |
T |
|
| Q |
101 |
cttcacaattttcatcaagttaagctaaaatctcaaagcaaacaacttaacgtatatcaacaatgaatttcatgcatcaataacaagttttcaacacttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2510714 |
cttcacaattttcatcaagttaagctaaaatctcaaagcaaacaacttaacatatatcaacaatgaatttcatgcatcaataacaagttttcaacacttt |
2510615 |
T |
|
| Q |
201 |
tcgcatacccaacactcataaaaacaaac |
229 |
Q |
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|||||||||||| |||||||||||||||| |
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| T |
2510614 |
tcgcatacccaaaactcataaaaacaaac |
2510586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 120 - 196
Target Start/End: Original strand, 12461488 - 12461564
Alignment:
| Q |
120 |
ttaagctaaaatctcaaagcaaacaacttaacgtatatcaacaatgaatttcatgcatcaataacaagttttcaaca |
196 |
Q |
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|||||||||| |||||||| ||||||||||| ||||||||||||||| || ||||||||| ||| ||||||||||| |
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| T |
12461488 |
ttaagctaaattctcaaagtgaacaacttaacatatatcaacaatgaaatttatgcatcaacaacgagttttcaaca |
12461564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 39 - 212
Target Start/End: Complemental strand, 14722 - 14549
Alignment:
| Q |
39 |
aaactcatacccaataacatttagagcacataggttatggaatcaccaacaatcaacaataacttcacaattttcatcaagttaagctaaaatctcaaag |
138 |
Q |
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|||| |||||||||||||||||||||||||||||| || ||||| ||| ||||| ||| | | |||| | ||||| ||| ||||| |||| |||||||| |
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| T |
14722 |
aaacacatacccaataacatttagagcacataggtcataaaatcaacaataatcatcaacatcatcacgagtttcaccaatttaagttaaattctcaaag |
14623 |
T |
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| Q |
139 |
caaacaacttaacgtatatcaacaatgaatttcatgcatcaataacaagttttcaacacttttcgcatacccaa |
212 |
Q |
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|||||| ||| | |||||||||||||||| ||||||||||| ||||| ||||||||||||||| ||||||||| |
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| T |
14622 |
taaacaagttagcatatatcaacaatgaatgtcatgcatcaacaacaatttttcaacacttttcacatacccaa |
14549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 92 - 212
Target Start/End: Original strand, 15063850 - 15063970
Alignment:
| Q |
92 |
caacaataacttcacaattttcatcaagttaagctaaaatctcaaagcaaacaacttaacgtatatcaacaatgaatttcatgcatcaataacaagtttt |
191 |
Q |
| |
|
|||||||| | |||| ||||||| ||| |||||||||| |||||||| |||||||||||| ||||||||||||||| || ||||||||| |||||||||| |
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| T |
15063850 |
caacaatatcatcaccattttcaccaatttaagctaaattctcaaagtaaacaacttaacatatatcaacaatgaaatttatgcatcaacaacaagtttt |
15063949 |
T |
|
| Q |
192 |
caacacttttcgcatacccaa |
212 |
Q |
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||||| |||| ||||||||| |
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| T |
15063950 |
caacaactttcacatacccaa |
15063970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 16366784 - 16366995
Alignment:
| Q |
1 |
tcacatttaccacaatcattttcatggattctgaacataaactcatacccaataacatttagagcacataggttatggaatcaccaacaatcaacaataa |
100 |
Q |
| |
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||||||||| ||| |||| |||||||||||| |||| |||| |||||||| |||||||| ||| || | | ||| | ||| || ||| ||||| || |
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| T |
16366784 |
tcacatttatcaccatcaaattcatggattctcaacacaaacatatacccaagaacatttatagctcacaattcatgaattcaacactaatgaacaacaa |
16366883 |
T |
|
| Q |
101 |
cttcacaattttcatcaagttaagctaaaatctcaaagcaaacaacttaacgtatatcaacaatgaatttcatgcatcaataacaagttttcaacacttt |
200 |
Q |
| |
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| ||| || |||| ||| ||||||||| |||||||| |||||||||||| ||||||||||||||| || ||||||||| || |||||||||||| || |
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| T |
16366884 |
catcatcatcttcaccaatttaagctaatttctcaaagtaaacaacttaacatatatcaacaatgaaatttatgcatcaacaataagttttcaacaactt |
16366983 |
T |
|
| Q |
201 |
tcgcatacccaa |
212 |
Q |
| |
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||| |||||||| |
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| T |
16366984 |
tcgtatacccaa |
16366995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0113 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0113
Description:
Target: scaffold0113; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 120 - 196
Target Start/End: Complemental strand, 22505 - 22429
Alignment:
| Q |
120 |
ttaagctaaaatctcaaagcaaacaacttaacgtatatcaacaatgaatttcatgcatcaataacaagttttcaaca |
196 |
Q |
| |
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|||||||||| |||||||| |||||||||||| |||||||| |||||| || ||||||||| ||||||||||||||| |
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| T |
22505 |
ttaagctaaactctcaaagtaaacaacttaacatatatcaataatgaaatttatgcatcaacaacaagttttcaaca |
22429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 120 - 212
Target Start/End: Original strand, 26059890 - 26059982
Alignment:
| Q |
120 |
ttaagctaaaatctcaaagcaaacaacttaacgtatatcaacaatgaatttcatgcatcaataacaagttttcaacacttttcgcatacccaa |
212 |
Q |
| |
|
|||||||||| ||||||| |||||||||||| ||| ||||||||||| |||||||||||| | ||||||||||||| |||| ||||||||| |
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| T |
26059890 |
ttaagctaaattctcaaactaaacaacttaacatatgtcaacaatgaaattcatgcatcaacaccaagttttcaacaactttcacatacccaa |
26059982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 85 - 212
Target Start/End: Complemental strand, 16015887 - 16015760
Alignment:
| Q |
85 |
caacaatcaacaataacttcacaattttcatcaagttaagctaaaatctcaaagcaaacaacttaacgtatatcaacaatgaatttcatgcatcaataac |
184 |
Q |
| |
|
||||| |||| || ||| |||| ||||||| ||| |||||||| |||||||||| | | ||| | | |||||||||||| || |||||||||||| ||| |
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|
| T |
16015887 |
caacattcaataagaacatcaccattttcaccaatttaagctagaatctcaaagtcatcgactcatcttatatcaacaataaaattcatgcatcaacaac |
16015788 |
T |
|
| Q |
185 |
aagttttcaacacttttcgcatacccaa |
212 |
Q |
| |
|
|||||||||||| ||||| ||||||||| |
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|
| T |
16015787 |
aagttttcaacaattttcacatacccaa |
16015760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 2281474 - 2281668
Alignment:
| Q |
1 |
tcacatttaccacaatcattttcatggattctgaacataaactcatacccaataacatttagagcacataggttatggaatcaccaacaatcaacaataa |
100 |
Q |
| |
|
||||||| |||||||||| |||||||||||| |||| |||| ||||||| ||||||||| |||| | | | ||| | ||| || || |||||| | |
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|
| T |
2281474 |
tcacattcaccacaatcaaattcatggattcttaacacaaacatataccca-taacatttatagcatacaaatcatgaattcaacattaaacaacaacac |
2281572 |
T |
|
| Q |
101 |
cttcacaattttcatcaagttaagctaaaatctcaaagcaaacaacttaacgtatatcaacaatgaatttcatgcatcaataacaagttttcaaca |
196 |
Q |
| |
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| ||| |||| || ||| |||||||||| | |||||| ||||||||| | ||||||||||||||| || | ||||||| ||||||||||||||| |
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|
| T |
2281573 |
catcatcatttacaccaatttaagctaaattttcaaagtgaacaacttagcatatatcaacaatgaaatttaagcatcaacaacaagttttcaaca |
2281668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 208
Target Start/End: Original strand, 14264194 - 14264294
Alignment:
| Q |
108 |
attttcatcaagttaagctaaaatctcaaagcaaacaacttaacgtatatcaacaatgaatttcatgcatcaataacaagttttcaacacttttcgcata |
207 |
Q |
| |
|
||||||| ||| |||||||| |||||||||| | ||| | | | ||| ||||||| ||| |||||||||||| || |||||||||||| ||||| |||| |
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| T |
14264194 |
attttcaccaatttaagctagaatctcaaagtcatcaattcatcatatgtcaacaacgaaattcatgcatcaacaaaaagttttcaacaattttcacata |
14264293 |
T |
|
| Q |
208 |
c |
208 |
Q |
| |
|
| |
|
|
| T |
14264294 |
c |
14264294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 190
Target Start/End: Original strand, 3257026 - 3257108
Alignment:
| Q |
108 |
attttcatcaagttaagctaaaatctcaaagcaaacaacttaacgtatatcaacaatgaatttcatgcatcaataacaagttt |
190 |
Q |
| |
|
||||||||||||||||||||||| | || || | ||||||||| ||| ||| |||||||||||||| ||| ||||||||| |
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| T |
3257026 |
attttcatcaagttaagctaaaaacacatagttatcaacttaacatattcaaaccatgaatttcatgcaacaacaacaagttt |
3257108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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