View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11940_low_54 (Length: 228)
Name: NF11940_low_54
Description: NF11940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11940_low_54 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 14 - 211
Target Start/End: Original strand, 25886644 - 25886841
Alignment:
| Q |
14 |
caaaggaagagtgaaagtataccagctcgaagtacaccggctacaacatcctctggtgtttttgcataaccttgtttttcatatatgaatcgaagtgcgt |
113 |
Q |
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| T |
25886644 |
caaaggaagagtgaaagtataccagctcgaagtacatcggctacaacatcctctggtgtttttgcataaccttgtttttcatatatgaatcgaactgcgt |
25886743 |
T |
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| Q |
114 |
cacaatccgacgcaatatacctgatttaacagccaaaatcatccatgctaatcaagtaattaaaaattaaatttcaatttcacattttgatgaatcat |
211 |
Q |
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| T |
25886744 |
cacaatccgacgcaatatacctgatttaacagccaaaatcattcatactaatcaagtaattaaaaattaaatttcaatttcacattttgatgaatcat |
25886841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 17 - 170
Target Start/End: Original strand, 25909261 - 25909414
Alignment:
| Q |
17 |
aggaagagtgaaagtataccagctcgaagtacaccggctacaacatcctctggtgtttttgcataaccttgtttttcatatatgaatcgaagtgcgtcac |
116 |
Q |
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| T |
25909261 |
aggaagagtgaaagtataccagctcgaagtacatcggctacaacatcctctggtgtttttgcataaccttgtttttcatatatgaatcgaactgcgtcac |
25909360 |
T |
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| Q |
117 |
aatccgacgcaatatacctgatttaacagccaaaatcatccatgctaatcaagt |
170 |
Q |
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| T |
25909361 |
aatccgacgcaatatacctattttaacagccaaaatcattcatactaatcaagt |
25909414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 14 - 140
Target Start/End: Original strand, 25926693 - 25926819
Alignment:
| Q |
14 |
caaaggaagagtgaaagtataccagctcgaagtacaccggctacaacatcctctggtgtttttgcataaccttgtttttcatatatgaatcgaagtgcgt |
113 |
Q |
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||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||| || |||||||||| ||| | ||| | |
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| T |
25926693 |
caaaggaagagtgaaagtataccagcttgaagtacatcggctacagcatcctctggtgtttttgcataaccttgattatcatatatgattcgtactgctt |
25926792 |
T |
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| Q |
114 |
cacaatccgacgcaatatacctgattt |
140 |
Q |
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|||||||||||| |||||||||||||| |
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| T |
25926793 |
cacaatccgacgtaatatacctgattt |
25926819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 87
Target Start/End: Complemental strand, 25958426 - 25958367
Alignment:
| Q |
28 |
aagtataccagctcgaagtacaccggctacaacatcctctggtgtttttgcataaccttg |
87 |
Q |
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|||| |||||||| |||||||| | |||||| |||||||||||| ||||||||||||||| |
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| T |
25958426 |
aagtttaccagcttgaagtacatctgctacagcatcctctggtgcttttgcataaccttg |
25958367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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