View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11940_low_55 (Length: 224)
Name: NF11940_low_55
Description: NF11940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11940_low_55 |
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Alignment Details
Target: chr6 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 15 - 160
Target Start/End: Complemental strand, 31208891 - 31208745
Alignment:
| Q |
15 |
aaggtattttcaattaatcatcaaggattttttgttgtcggtatcccaaattaattatacataaatgtaaataagac-taacactcacgtgggttgacta |
113 |
Q |
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| T |
31208891 |
aaggtattttcaattaatcatcaaggattttttgttgtcggtatgccaaattatttatacataaatataaataagacaaaatactcacgtgggttgacta |
31208792 |
T |
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| Q |
114 |
tttctgttagaacttctttgtatgaaacaaaataggttttttcaaat |
160 |
Q |
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| T |
31208791 |
tttttgttagaacttatttgtatgaaaaaaaatacgttttctcaaat |
31208745 |
T |
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