View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11940_low_56 (Length: 207)

Name: NF11940_low_56
Description: NF11940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11940_low_56
NF11940_low_56
[»] chr8 (5 HSPs)
chr8 (30-188)||(8028539-8028697)
chr8 (30-111)||(41433238-41433319)
chr8 (1-31)||(10186215-10186245)
chr8 (1-31)||(11428370-11428400)
chr8 (1-31)||(21566246-21566276)
[»] chr6 (2 HSPs)
chr6 (30-111)||(30689183-30689264)
chr6 (1-31)||(13433745-13433775)
[»] chr3 (4 HSPs)
chr3 (1-38)||(52349539-52349576)
chr3 (133-189)||(4247420-4247476)
chr3 (1-31)||(33519255-33519285)
chr3 (1-31)||(54949259-54949289)
[»] chr7 (3 HSPs)
chr7 (114-189)||(20061234-20061309)
chr7 (1-31)||(5768358-5768388)
chr7 (1-31)||(47936458-47936488)
[»] scaffold0045 (1 HSPs)
scaffold0045 (1-31)||(1401-1431)
[»] chr5 (1 HSPs)
chr5 (1-31)||(10180427-10180457)
[»] chr4 (1 HSPs)
chr4 (1-31)||(26376836-26376866)
[»] chr2 (2 HSPs)
chr2 (1-31)||(16668966-16668996)
chr2 (1-31)||(37777722-37777752)


Alignment Details
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 30 - 188
Target Start/End: Complemental strand, 8028697 - 8028539
Alignment:
Q  30 atgtgatattttgattttaacttaacttatagcgctttcgttcaatctgcacgacaaattttgtcgtgtcatataacattacccaaaaagtaaaactttg 129  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||    
T  8028697 atgtgatattttgattttaacttaacttatagcgccttcgttcaatctgcacgacaaattttgtcgtgtcatataacattattcaaaacgtaaaactttg 8028598  T
Q  130 gagcaacatgatgtcaaaaatgtggttaaagacatgatcaaaatatgaatagtattata 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8028597 gagcaacatgatgtcaaaaatgtggttaaagacatgatcaaaatatgaatagtattata 8028539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 30 - 111
Target Start/End: Complemental strand, 41433319 - 41433238
Alignment:
Q  30 atgtgatattttgattttaacttaacttatagcgctttcgttcaatctgcacgacaaattttgtcgtgtcatataacattac 111  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  41433319 atgtgatattttgattttaacttaactcatagcgctttcgttcaatctgcacgacaaattttgtcgtatcatatatcattac 41433238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 10186245 - 10186215
Alignment:
Q  1 ttagaatacatgtatatatagatagatagat 31  Q
    |||||||||||||||||||||||||||||||    
T  10186245 ttagaatacatgtatatatagatagatagat 10186215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 11428370 - 11428400
Alignment:
Q  1 ttagaatacatgtatatatagatagatagat 31  Q
    |||||||||||||||||||||||||||||||    
T  11428370 ttagaatacatgtatatatagatagatagat 11428400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 21566246 - 21566276
Alignment:
Q  1 ttagaatacatgtatatatagatagatagat 31  Q
    |||||||||||||||||||||||||||||||    
T  21566246 ttagaatacatgtatatatagatagatagat 21566276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 30 - 111
Target Start/End: Complemental strand, 30689264 - 30689183
Alignment:
Q  30 atgtgatattttgattttaacttaacttatagcgctttcgttcaatctgcacgacaaattttgtcgtgtcatataacattac 111  Q
    |||||||||||||||||||||||| |||||||| | |||||||||| |||| ||||||||||||||||||||||| ||||||    
T  30689264 atgtgatattttgattttaacttagcttatagcacattcgttcaatttgcatgacaaattttgtcgtgtcatatagcattac 30689183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 13433745 - 13433775
Alignment:
Q  1 ttagaatacatgtatatatagatagatagat 31  Q
    |||||||||||||||||||||||||||||||    
T  13433745 ttagaatacatgtatatatagatagatagat 13433775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 52349576 - 52349539
Alignment:
Q  1 ttagaatacatgtatatatagatagatagatgtgatat 38  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  52349576 ttagaatacatgtatatatagatagatagatatgatat 52349539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 4247476 - 4247420
Alignment:
Q  133 caacatgatgtcaaaaatgtggttaaagacatgatcaaaatatgaatagtattatac 189  Q
    ||||||||||  ||||||||||||||| ||||||| || |||||||| |||||||||    
T  4247476 caacatgatgataaaaatgtggttaaacacatgattaatatatgaatcgtattatac 4247420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 33519255 - 33519285
Alignment:
Q  1 ttagaatacatgtatatatagatagatagat 31  Q
    |||||||||||||||||||||||||||||||    
T  33519255 ttagaatacatgtatatatagatagatagat 33519285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 54949259 - 54949289
Alignment:
Q  1 ttagaatacatgtatatatagatagatagat 31  Q
    |||||||||||||||||||||||||||||||    
T  54949259 ttagaatacatgtatatatagatagatagat 54949289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 114 - 189
Target Start/End: Complemental strand, 20061309 - 20061234
Alignment:
Q  114 aaaaagtaaaactttggagcaacatgatgtcaaaaatgtggttaaagacatgatcaaaatatgaatagtattatac 189  Q
    ||||||||||||| || |||||||||||   | || |||||||||| |||||||||||||| ||| | ||||||||    
T  20061309 aaaaagtaaaactctgaagcaacatgatcatagaactgtggttaaacacatgatcaaaatacgaacaatattatac 20061234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 5768358 - 5768388
Alignment:
Q  1 ttagaatacatgtatatatagatagatagat 31  Q
    |||||||||||||||||||||||||||||||    
T  5768358 ttagaatacatgtatatatagatagatagat 5768388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 47936458 - 47936488
Alignment:
Q  1 ttagaatacatgtatatatagatagatagat 31  Q
    |||||||||||||||||||||||||||||||    
T  47936458 ttagaatacatgtatatatagatagatagat 47936488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 1401 - 1431
Alignment:
Q  1 ttagaatacatgtatatatagatagatagat 31  Q
    |||||||||||||||||||||||||||||||    
T  1401 ttagaatacatgtatatatagatagatagat 1431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 10180457 - 10180427
Alignment:
Q  1 ttagaatacatgtatatatagatagatagat 31  Q
    |||||||||||||||||||||||||||||||    
T  10180457 ttagaatacatgtatatatagatagatagat 10180427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 26376866 - 26376836
Alignment:
Q  1 ttagaatacatgtatatatagatagatagat 31  Q
    |||||||||||||||||||||||||||||||    
T  26376866 ttagaatacatgtatatatagatagatagat 26376836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 16668966 - 16668996
Alignment:
Q  1 ttagaatacatgtatatatagatagatagat 31  Q
    |||||||||||||||||||||||||||||||    
T  16668966 ttagaatacatgtatatatagatagatagat 16668996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 37777752 - 37777722
Alignment:
Q  1 ttagaatacatgtatatatagatagatagat 31  Q
    |||||||||||||||||||||||||||||||    
T  37777752 ttagaatacatgtatatatagatagatagat 37777722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University