View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11940_low_7 (Length: 664)
Name: NF11940_low_7
Description: NF11940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11940_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 382; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 159 - 659
Target Start/End: Original strand, 24377326 - 24377827
Alignment:
| Q |
159 |
gatcttcatcgttgctcgaaaaggatcctagc-----------tactatagcctataattttatattgcaactaagatcatttgcattgtgagcttcatc |
247 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24377326 |
gatcttcatcgttgctcgaaaaggatcctaacacctatataattactatagcctataattttatattgcaactaagatcatttgcattgtgagcttcatc |
24377425 |
T |
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| Q |
248 |
gttgctcgttaatttgtctttattattgtagctcaggattttctatcatatgcaccaaactcaagcttccattgagttatatatatatgcttggataaag |
347 |
Q |
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| T |
24377426 |
gttgctcgttaatttgtctttattattgtagctcaggattttctatcatatgcagcaaactcaaacttccattgagt----tatatatgcttggataaag |
24377521 |
T |
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| Q |
348 |
atgaataagcaaaactctcttcaaataacaactgcttctgttgcttatgatgatgatggacatgccaaaaggactggtaaaattctaaattgcttcataa |
447 |
Q |
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|||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24377522 |
atgaataagcaaaattctctacaaataacgactgcttctgttgcttatgatgatgatggacatgccaaaaggactggtaaaattctaaattgcttcataa |
24377621 |
T |
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| Q |
448 |
ccaattcattttcattttcatatgcatcaatttgaatactaaggttttattctgctacaaattctgcaggaaatttaaagagtgccttggctcatatcat |
547 |
Q |
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| T |
24377622 |
ccaa------ttcattttcatatgcatgcatttgaatactaagcttttatcctgctacaaattctgcaggaaatttaaagagtgccttggctcatatcat |
24377715 |
T |
|
| Q |
548 |
cactggtgttattgggtctggtgttttgtcattggcatggagtactgctcaactaggatggattggagggccacttgcattgctttcttgtgcaatagct |
647 |
Q |
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| T |
24377716 |
cactggtgttatcgggtctggtgttttgtcattggcatggagtactgctcaactaggatggattggagggccacttgcattactttcttgtgcaatagct |
24377815 |
T |
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| Q |
648 |
acctatgcttct |
659 |
Q |
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||||||| |||| |
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| T |
24377816 |
acctatgtttct |
24377827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 392 - 653
Target Start/End: Original strand, 24400410 - 24400664
Alignment:
| Q |
392 |
ttatgatgatgatggacatgccaaaaggactggtaaaattctaaattgcttcataaccaattcattttcattttcatatgcatcaatttgaatactaagg |
491 |
Q |
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|||||||||||| |||| |||||||||||| ||||||||||| || || |||||||||||| |||||||| || | | |||||||||||| | | |
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| T |
24400410 |
ttatgatgatgacggacgtgccaaaaggacaggtaaaattctctatagcatcataaccaattgattttcat------atacttgaatttgaatactgaag |
24400503 |
T |
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| Q |
492 |
ttttattctgctacaaattctgcaggaaatttaaagagtgccttggctcatatcatcactggtgttattgggtctggtgttttgtcattggcatggagta |
591 |
Q |
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| T |
24400504 |
ttttattcggg-ataaattctgcaggaaatgtaaaaagtgctgtggctcatatcatcacagctgttattggttctggtgttttgtctttggcatggagta |
24400602 |
T |
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| Q |
592 |
ctgctcaactaggatggattggagggccacttgcattgctttcttgtgcaatagctacctat |
653 |
Q |
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| T |
24400603 |
tttctcaattaggatggattggagggccacttgccttgttttcttgtgcaatagctacctat |
24400664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 512 - 645
Target Start/End: Original strand, 24412972 - 24413105
Alignment:
| Q |
512 |
tgcaggaaatttaaagagtgccttggctcatatcatcactggtgttattgggtctggtgttttgtcattggcatggagtactgctcaactaggatggatt |
611 |
Q |
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||||||||||||||||||||| |||||||||||||||| | |||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
24412972 |
tgcaggaaatttaaagagtgctgtggctcatatcatcacagcagttattggttctggtgttctgtcattggcatggagtactgctcaattaggatggatt |
24413071 |
T |
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| Q |
612 |
ggagggccacttgcattgctttcttgtgcaatag |
645 |
Q |
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| T |
24413072 |
ggaggaccagttaccttgctttgttgtgcaatag |
24413105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 512 - 645
Target Start/End: Complemental strand, 24421069 - 24420936
Alignment:
| Q |
512 |
tgcaggaaatttaaagagtgccttggctcatatcatcactggtgttattgggtctggtgttttgtcattggcatggagtactgctcaactaggatggatt |
611 |
Q |
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||||||||||||||||||||| |||||||||||||||| | |||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
24421069 |
tgcaggaaatttaaagagtgctgtggctcatatcatcacagcagttattggttctggtgttctgtcattggcatggagtactgctcaattaggatggatt |
24420970 |
T |
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| Q |
612 |
ggagggccacttgcattgctttcttgtgcaatag |
645 |
Q |
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||||| ||| || | ||||||| ||||||||||| |
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| T |
24420969 |
ggaggaccagttaccttgctttgttgtgcaatag |
24420936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 337 - 426
Target Start/End: Original strand, 24412796 - 24412885
Alignment:
| Q |
337 |
cttggataaagatgaataagcaaaactctcttcaaataacaactgcttctgttgcttatgatgatgatggacatgccaaaaggactggta |
426 |
Q |
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|||||||||| ||| || | ||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
24412796 |
cttggataaaaatggatgggaaaaactctcttcaaataacaaaagcttctggtgcttatgatgatgatggacatgcaaaaaggactggta |
24412885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 337 - 426
Target Start/End: Complemental strand, 24421245 - 24421156
Alignment:
| Q |
337 |
cttggataaagatgaataagcaaaactctcttcaaataacaactgcttctgttgcttatgatgatgatggacatgccaaaaggactggta |
426 |
Q |
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|||||||||| ||| || | ||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
24421245 |
cttggataaaaatggatgggaaaaactctcttcaaataacaaaagcttctggtgcttatgatgatgatggacatgcaaaaaggactggta |
24421156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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