View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11940_low_8 (Length: 656)
Name: NF11940_low_8
Description: NF11940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11940_low_8 |
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| [»] scaffold0130 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 6224397 - 6224013
Alignment:
| Q |
1 |
gcacgaaagacacttttaacaaacattcaatataacaaatctacacgaatttgacacataagtttccaaagatgaattcaaagttttcataagtagcatg |
100 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
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| T |
6224397 |
gcacgacagacacttttaacaaacattcaatataacaaatctacacgaatttgacacataagtttccaaagatgaattcaaagatttcataagtagcacg |
6224298 |
T |
|
| Q |
101 |
gattttacaaaatttgttcaaataaaatcatatgagaaggtaatttttatcaaaccttgaacaaacattgtcaaataatcacttcccctccgcaaaggaa |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6224297 |
gattttacaaaatttgttcaaataaaatgatatgagaaggtaatttttatcaaaccttgaacaaacattgtcaaataatcacttcccctccgcaaaggaa |
6224198 |
T |
|
| Q |
201 |
tgacaaaatattggctgtcaaggagaaatagaagtaagaacatgaaatctaaaagagcacaaattcatagtataagtattgatcaaatcaattaccattc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6224197 |
tgacaaaatattggctgtcaaggagaaatagaagtaagaacatgaaatctaaaagagcacaaattcatagtataagtattgatcaaatcaattaccattc |
6224098 |
T |
|
| Q |
301 |
cttagctctatgctctagcaagtgataaaatttagctttaatttcatagtcactccaatatgaacgatacctatgtgttactgagataaa |
390 |
Q |
| |
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||||||||||||||||||||||||||||||||| || || ||||||||||||||||||| || ||||||||||||||||| ||||| |
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| T |
6224097 |
cttagctctatgctctagcaagtgataaaattttgc-----ttacatagtcactccaatatgaccgctacctatgtgttactgaaataaa |
6224013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 111 - 390
Target Start/End: Complemental strand, 1693296 - 1693033
Alignment:
| Q |
111 |
aatttgttcaaataaaatcatatgagaaggtaatttttatcaaaccttgaacaaacattgtcaaataatcacttcccctccgcaaaggaatgacaaaata |
210 |
Q |
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|||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1693296 |
aatttggtcaaataaaatgatatgagaagataatttttatcaaaccttgaacaaacattgtcaaataatcacttcccctccacaaaggaatgacaaaata |
1693197 |
T |
|
| Q |
211 |
ttggctgtcaaggagaaatagaagtaagaacatgaaatctaaaagagcacaaattcatagtataagtattgatcaaatcaattaccattccttagctcta |
310 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1693196 |
ttggctgtcaaggagaaatag----aagaacatgaaatctaaaagagcacaaattcatagtataagtattgatcaaatcaattaccattcctta------ |
1693107 |
T |
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| Q |
311 |
tgctctagcaagtgataaaatttagctttaatttcatagtcactccaatatgaacgatacctatgtgttactgagataaa |
390 |
Q |
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|||||||||||||||||| ||| || |||||||||||||||||||||| || | ||||| || |||||| ||||| |
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| T |
1693106 |
-gctctagcaagtgataaagttttgc-----tttcatagtcactccaatatgaccgttgcctatttgatactgaaataaa |
1693033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 134 - 329
Target Start/End: Original strand, 34620833 - 34621029
Alignment:
| Q |
134 |
gagaaggtaatttttatcaaaccttgaacaaacattgtcaaataatcacttcccctccgcaaaggaatgacaaaatattggctg-tcaaggagaaataga |
232 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||| | |||| |||||||||||| ||||||||||||||||||| ||||| ||| | | || | |
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| T |
34620833 |
gagagggtaacttttatcaaaccttgaacaaacattgttatataaccacttcccctccacaaaggaatgacaaaatatcggctgcaaaagaacgagtaaa |
34620932 |
T |
|
| Q |
233 |
agtaagaacatgaaatctaaaagagcacaaattcatagtataagtattgatca-aatcaattaccattccttagctctatgctctagcaagtgataaa |
329 |
Q |
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|||||||| ||||||||| ||| | |||| ||| || | |||||||||| | ||| || |||||||| |||||||||||||||||||||||||||| |
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| T |
34620933 |
ggtaagaacgtgaaatctagaagttcgcaaactcacagaacaagtattgattacaatgaa-taccattctttagctctatgctctagcaagtgataaa |
34621029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 594 - 642
Target Start/End: Complemental strand, 6223231 - 6223183
Alignment:
| Q |
594 |
attagattgacaaaaatgaacccaatcaagtcctataagagttgtatat |
642 |
Q |
| |
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| T |
6223231 |
attagattgacaaaaatgatcccaatcaagtcctataagagttgtatat |
6223183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 169; Significance: 3e-90; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 111 - 390
Target Start/End: Original strand, 8774076 - 8774339
Alignment:
| Q |
111 |
aatttgttcaaataaaatcatatgagaaggtaatttttatcaaaccttgaacaaacattgtcaaataatcacttcccctccgcaaaggaatgacaaaata |
210 |
Q |
| |
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|||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
8774076 |
aatttggtcaaataaaatgatatgagaagataatttttatcaaaccttgaacaaacattgtcaaataatcacttcccctccacaaaggaatgacaaaata |
8774175 |
T |
|
| Q |
211 |
ttggctgtcaaggagaaatagaagtaagaacatgaaatctaaaagagcacaaattcatagtataagtattgatcaaatcaattaccattccttagctcta |
310 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8774176 |
ttggctgtcaaggagaaatag----aagaacatgaaatctaaaagagcacaaattcatagtataagtattgatcaaatcaattaccattcctta------ |
8774265 |
T |
|
| Q |
311 |
tgctctagcaagtgataaaatttagctttaatttcatagtcactccaatatgaacgatacctatgtgttactgagataaa |
390 |
Q |
| |
|
|||||||||||||||||| ||| || |||||||||||||||||||||| || | ||||| || |||||| ||||| |
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| T |
8774266 |
-gctctagcaagtgataaagttttgc-----tttcatagtcactccaatatgaccgttgcctatttgatactgaaataaa |
8774339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 3e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 199 - 329
Target Start/End: Original strand, 44117445 - 44117579
Alignment:
| Q |
199 |
aatgacaaaatattggctgtcaaggagaaatagaagtaagaacatgaaatctaaa----agagcacaaattcatagtataagtattgatcaaatcaatta |
294 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
44117445 |
aatgacaaaatattggctgccaaggagaaatagaagtaagaacatgaaatctaaataaaagagcacaaattcatagtataagtattgatcaaatcgatta |
44117544 |
T |
|
| Q |
295 |
ccattccttagctctatgctctagcaagtgataaa |
329 |
Q |
| |
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|||||||||||| | |||||||||||||||||||| |
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| T |
44117545 |
ccattccttagcccaatgctctagcaagtgataaa |
44117579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 40909634 - 40909576
Alignment:
| Q |
9 |
gacacttttaacaaacattcaatataacaaatctacacgaatttgacacataagtttcc |
67 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
40909634 |
gacacttttaacaaacattcaatataacaaatctacacgaatttaacacataagtttcc |
40909576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 502 - 559
Target Start/End: Complemental strand, 34862831 - 34862774
Alignment:
| Q |
502 |
gttgtctggaaaatgacattttgatcaatataaatgagatattgcaagaaagtgagtc |
559 |
Q |
| |
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||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
34862831 |
gttgtttggaaaatgacattttgatcaatataaataagagattgcaagaaagtgagtc |
34862774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 497 - 558
Target Start/End: Original strand, 4480389 - 4480450
Alignment:
| Q |
497 |
atgttgttgtctggaaaatgacattttgatcaatataaatgagatattgcaagaaagtgagt |
558 |
Q |
| |
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||||||||| |||||||||||||||| ||||||| |||| ||| ||||||||||| ||||| |
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| T |
4480389 |
atgttgttgcatggaaaatgacattttcatcaatacaaattagagattgcaagaaattgagt |
4480450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0130 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0130
Description:
Target: scaffold0130; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 500 - 559
Target Start/End: Complemental strand, 23521 - 23464
Alignment:
| Q |
500 |
ttgttgtctggaaaatgacattttgatcaatataaatgagatattgcaagaaagtgagtc |
559 |
Q |
| |
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||||||| |||||||||||||||||||||| | | ||||| |||||||||||||||||| |
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| T |
23521 |
ttgttgtatggaaaatgacattttgatcaacacagatgag--attgcaagaaagtgagtc |
23464 |
T |
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