View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11941_low_2 (Length: 316)
Name: NF11941_low_2
Description: NF11941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11941_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 306
Target Start/End: Complemental strand, 2245775 - 2245493
Alignment:
| Q |
18 |
aatctcagccacccattttccccagtgtctctgtctcactcctctgtatagcttcttcttacaagggttcattaaagaagtgaacgaacttgaaattgaa |
117 |
Q |
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| T |
2245775 |
aatctcagccacccattttccccagtgtctctgtctcactcctctgtatagcttcttcttacaagggttcaccaaagaagtgaacgaacttgaaattgaa |
2245676 |
T |
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| Q |
118 |
gttgaatttgttgtgtataatgaagggtttagtagagatagagattgatttgaaaatgaagacggaacgaatgagccgtttaatcggctttcttcgtaga |
217 |
Q |
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| T |
2245675 |
gttgaatttgttgtgtataatgaaggggttagtagagat------tgatttgaaaatgaagaaggaacgaatgagccgtttaatcggctttcttcgtaga |
2245582 |
T |
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| Q |
218 |
atttttgtaaaatatctctctggcgaaggtaaacagaggaacctaaaggttcaaaatttgaacagcccaagaaggttgtgctgtctgtg |
306 |
Q |
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| T |
2245581 |
atttttgtaaaatatctctctggcgaaggtaaacagaggaacctaaaggttcaaaatttgaacagcccaagaaggttgtgctgtctgtg |
2245493 |
T |
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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 33469948 - 33469896
Alignment:
| Q |
19 |
atctcagccacccattttccccagtgtctctgtctcactcctctgtatagctt |
71 |
Q |
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|||||||| ||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
33469948 |
atctcagcaacccattttccccagtgcctttgtctcactcctctgtatagctt |
33469896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 33719007 - 33718963
Alignment:
| Q |
18 |
aatctcagccacccattttccccagtgtctctgtctcactcctct |
62 |
Q |
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| T |
33719007 |
aatctcagcagcccattttccccatggtctctgtctcactcctct |
33718963 |
T |
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