View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11941_low_3 (Length: 290)

Name: NF11941_low_3
Description: NF11941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11941_low_3
NF11941_low_3
[»] chr4 (6 HSPs)
chr4 (1-277)||(29083092-29083368)
chr4 (147-250)||(41029619-41029722)
chr4 (135-186)||(13726005-13726056)
chr4 (149-188)||(28572179-28572218)
chr4 (140-172)||(1330278-1330310)
chr4 (151-179)||(8560209-8560237)
[»] chr3 (3 HSPs)
chr3 (11-257)||(48721774-48722019)
chr3 (135-186)||(53327336-53327387)
chr3 (135-188)||(26697779-26697832)
[»] chr8 (1 HSPs)
chr8 (135-229)||(10909373-10909467)
[»] chr5 (2 HSPs)
chr5 (132-178)||(14247482-14247528)
chr5 (132-172)||(9850382-9850422)


Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 29083368 - 29083092
Alignment:
Q  1 tagaacccagctgctactgtcacggacatgaggctgccatataccgaagggactgcagacctgaaaaacaggaagaaacagaaaagcagcataccccagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||     
T  29083368 tagaacccagctgctactgtcacggacatgaggctgccatataccaaagggactgtagacctgaaaaacaggaagaaacagaaaggcagcataccccagc 29083269  T
Q  101 ctcaagctcctacacacaaacatcagaatcctatcgcaaaaggcattcttttgggttccaacaccattcataaaacaagcaagccggcgccttgacacga 200  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  29083268 ctcaagctcctacacacaaacatcgaaatcctatcgcaaaaggcattcttttgggttccaacaccattcataaaacaagcaagtcggcgccttgacacga 29083169  T
Q  201 gtcaatgtccatctccacgacagaaccttgatagcttccaccacatcctcaacattacaaatagtattcttgaaaat 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  29083168 gtcaatgtccatctccacgacagaaccttgatagcttccaccacattctcaacattacaaatagtattcttgaaaat 29083092  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 250
Target Start/End: Complemental strand, 41029722 - 41029619
Alignment:
Q  147 tcttttgggttccaacaccattcataaaacaagcaagccggcgccttgacacgagtcaatgtccatctccacgacagaaccttgatagcttccaccacat 246  Q
    |||||||||||||||||||||||||||||||| ||||||| | |||| |  ||| |||| | ||||||||||| |  ||||||||  || |||||||| |    
T  41029722 tcttttgggttccaacaccattcataaaacaaacaagccgtcaccttcaaccgactcaaagaccatctccacggccaaaccttgaccgcatccaccactt 41029623  T
Q  247 cctc 250  Q
    ||||    
T  41029622 cctc 41029619  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 135 - 186
Target Start/End: Complemental strand, 13726056 - 13726005
Alignment:
Q  135 cgcaaaaggcattcttttgggttccaacaccattcataaaacaagcaagccg 186  Q
    |||||||| || |||||| | ||||||| |||||||||||||||||||||||    
T  13726056 cgcaaaagacactcttttagattccaactccattcataaaacaagcaagccg 13726005  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 188
Target Start/End: Complemental strand, 28572218 - 28572179
Alignment:
Q  149 ttttgggttccaacaccattcataaaacaagcaagccggc 188  Q
    |||||||||||||| |||||||||||||||||||| ||||    
T  28572218 ttttgggttccaactccattcataaaacaagcaagtcggc 28572179  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 172
Target Start/End: Original strand, 1330278 - 1330310
Alignment:
Q  140 aaggcattcttttgggttccaacaccattcata 172  Q
    ||||||| |||||||||||||||||||||||||    
T  1330278 aaggcatccttttgggttccaacaccattcata 1330310  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 179
Target Start/End: Original strand, 8560209 - 8560237
Alignment:
Q  151 ttgggttccaacaccattcataaaacaag 179  Q
    |||||||||||||||||||||||||||||    
T  8560209 ttgggttccaacaccattcataaaacaag 8560237  T

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Target: chr3 (Bit Score: 91; Significance: 4e-44; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 11 - 257
Target Start/End: Complemental strand, 48722019 - 48721774
Alignment:
Q  11 ctgctactgtcacggacatgaggctgccatataccgaagggactgcagacctgaaaaacaggaagaaacagaaaagcagcataccccagtctcaagctcc 110  Q
    ||||| |||||||||||||||| |||||||||||| || |||||||||||||  || ||| || | | ||||||| ||||||||||||| ||||| ||||    
T  48722019 ctgctgctgtcacggacatgagactgccatataccaaaaggactgcagacct--aacacaaga-gtagcagaaaaccagcataccccagcctcaaactcc 48721923  T
Q  111 taca--cacaaacatcagaatcctatcgcaaaaggcattcttttgggttccaacaccattcataaaacaagcaagccggcgccttgacacgagtcaatgt 208  Q
      ||  |||  |||    ||||||| ||| ||||||||||||| || ||||||||||||||||| ||||| || |||||| |||| ||||||||||||||    
T  48721922 gtcaaccacctacactgaaatcctaacgcgaaaggcattctttcggattccaacaccattcatagaacaatcatgccggccccttaacacgagtcaatgt 48721823  T
Q  209 ccatctccacgacagaaccttgatagcttccaccacatcctcaacatta 257  Q
    |||||||||||||||||||||||| ||||||||||   |||||||||||    
T  48721822 ccatctccacgacagaaccttgattgcttccaccaacccctcaacatta 48721774  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 135 - 186
Target Start/End: Original strand, 53327336 - 53327387
Alignment:
Q  135 cgcaaaaggcattcttttgggttccaacaccattcataaaacaagcaagccg 186  Q
    ||||||||||| || |||||||||||||||||||| ||||| | ||||||||    
T  53327336 cgcaaaaggcactcctttgggttccaacaccattcgtaaaaaaggcaagccg 53327387  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 26697779 - 26697832
Alignment:
Q  135 cgcaaaaggcattcttttgggttccaacaccattcataaaacaagcaagccggc 188  Q
    |||||||| || |||||||||||||||  |||||| |||||||| |||||||||    
T  26697779 cgcaaaagacactcttttgggttccaattccattcgtaaaacaaacaagccggc 26697832  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 229
Target Start/End: Original strand, 10909373 - 10909467
Alignment:
Q  135 cgcaaaaggcattcttttgggttccaacaccattcataaaacaagcaagccggcgccttgacacgagtcaatgtccatctccacgacagaacctt 229  Q
    |||||||| || |||||||| |||||||  |||||||||||||||||||||||| | |  | |||| |||| ||||| |||||||||| ||||||    
T  10909373 cgcaaaagacactcttttggattccaacttcattcataaaacaagcaagccggcacttgtaaacgactcaaagtccacctccacgacaaaacctt 10909467  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 14247482 - 14247528
Alignment:
Q  132 tatcgcaaaaggcattcttttgggttccaacaccattcataaaacaa 178  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||    
T  14247482 tatcgcataaggcattcttttgggttccaacaccattcatagaacaa 14247528  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 132 - 172
Target Start/End: Original strand, 9850382 - 9850422
Alignment:
Q  132 tatcgcaaaaggcattcttttgggttccaacaccattcata 172  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  9850382 tatcgcataaggcattcttttgggttccaacaccattcata 9850422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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