View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11942_high_13 (Length: 488)

Name: NF11942_high_13
Description: NF11942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11942_high_13
NF11942_high_13
[»] chr6 (3 HSPs)
chr6 (129-217)||(5679812-5679902)
chr6 (283-353)||(5679675-5679745)
chr6 (403-470)||(5679557-5679624)


Alignment Details
Target: chr6 (Bit Score: 76; Significance: 6e-35; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 129 - 217
Target Start/End: Complemental strand, 5679902 - 5679812
Alignment:
Q  129 atgttttaatatt--actttactacgttgtgacttaaaatttgagggttgcaaggcatgcaccggttgctcggaaataatgaagttaccac 217  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5679902 atgttttaatattttactttactacgttgtgacttaaaatttgagggttgcaaagcatgcaccggttgctcggaaataatgaagttaccac 5679812  T

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Target: chr6; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 283 - 353
Target Start/End: Complemental strand, 5679745 - 5679675
Alignment:
Q  283 gcattaaatttcaggtttgaaattcttgaaaacaaatcgagggttgctcgtaaaacaataaagtcgtcacc 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5679745 gcattaaatttcaggtttgaaattcttgaaaacaaatcgagggttgctcgtaaaacaataaagtcgtcacc 5679675  T

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Target: chr6; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 403 - 470
Target Start/End: Complemental strand, 5679624 - 5679557
Alignment:
Q  403 tatggttcttgaaacctgatttcgagttcggggattgattatgtgcaggaaaaatatttgcgttctac 470  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5679624 tatggttcttgaaacctgatttcgagttcggggattgattatgtgcaggaaaaatatttgcgttctac 5679557  T

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