View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11942_high_14 (Length: 484)
Name: NF11942_high_14
Description: NF11942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11942_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 109 - 463
Target Start/End: Original strand, 50440588 - 50440941
Alignment:
| Q |
109 |
tatccttttttgtgcttcagcggcctcaatggctgctttagatttttctttctccttttctgcaattgccaatgcagattcctcggccatccttgcctct |
208 |
Q |
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| T |
50440588 |
tatccttttttgtgcttcagcggcctcaatggctgctttagatttttctttctccttttctgcaattgccaatgcagattcctcggccatccttgcctct |
50440687 |
T |
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| Q |
209 |
tccaatctcctttcttcttctaatttccatttttgaagttctactgcctgtcatgcaaatttcaaagcatgtctcagatttatatactatttagctcttc |
308 |
Q |
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| T |
50440688 |
tccaatctcctttcttcttctaatttccatttttgaagttctactgcctgtcatgcaaatttcaaagcatgtctcagatttatatactatttagctcttc |
50440787 |
T |
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| Q |
309 |
caggataaagccagatatacaacgggggtctagcacaaatggttggttggtgcgcagggtgtaagagtgcttcttagtgatnnnnnnnnntgattcaagc |
408 |
Q |
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| T |
50440788 |
caggataaagccagatatacaacgggggtctagcgcaaatggttggttggtgcgcagggtgcgagagtgcttcttagtgat-aaaaaaaatgattcaagc |
50440886 |
T |
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| Q |
409 |
caaatgtttgattcataccttctgttgtgctgtgagtgcttctttacatgctgtg |
463 |
Q |
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| T |
50440887 |
caaatgtttgattcataccttctgttgtgctgtgagtgcttctttacatgctgtg |
50440941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 117 - 257
Target Start/End: Complemental strand, 1273112 - 1272972
Alignment:
| Q |
117 |
tttgtgcttcagcggcctcaatggctgctttagatttttctttctccttttctgcaattgccaatgcagattcctcggccatccttgcctcttccaatct |
216 |
Q |
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| T |
1273112 |
tttgtgcttcagcagcttcaattgctgcttttgattttgccttttccatttctgctacagccaatgcagattcttcagccattcttgcctcctccaatct |
1273013 |
T |
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| Q |
217 |
cctttcttcttctaatttccatttttgaagttctactgcct |
257 |
Q |
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||| |||||||||||||||||| |||| |||||||| |||| |
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| T |
1273012 |
cctctcttcttctaatttccatctttggagttctacagcct |
1272972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 420 - 462
Target Start/End: Complemental strand, 1272749 - 1272707
Alignment:
| Q |
420 |
ttcataccttctgttgtgctgtgagtgcttctttacatgctgt |
462 |
Q |
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| T |
1272749 |
ttcataccttctgctgtgccgtgagtgcttctttacaggctgt |
1272707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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