View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11942_high_15 (Length: 484)
Name: NF11942_high_15
Description: NF11942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11942_high_15 |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 470
Target Start/End: Original strand, 23171589 - 23172058
Alignment:
| Q |
1 |
atcattcatctatattatttaaaactaatacatggggtttactttaataattttattataaaatatttgttaaattgcaccaaattacagtaatattaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23171589 |
atcattcatctatattatttaaaactaatacatggggtttactttaataattttattataaaatatttgttaaattgcaccaaattacagtaatattaat |
23171688 |
T |
|
| Q |
101 |
ggtcgtgaacacgacatttatagatctaaaagacgttttattttcatcattggatatataaatataacgtccactccacactaaatattacacaatacgt |
200 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23171689 |
ggctgtgaacacgacatttatagatctaaaagacgttttattttcatcattggatatataaatataacgtccactccacactaaatattacacaatacgt |
23171788 |
T |
|
| Q |
201 |
gcaatttgtaccctnnnnnnntgttgcatctattttcatttccttgctccaaccctgcttctaccacaaccttcacttccccatttctcctccatactac |
300 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
23171789 |
gcaatttgtaccctaaaaaaatgttgcatctattttcatttccttgctccaaccctgcttctaccacaaccttcacttccccatttctccttcatactac |
23171888 |
T |
|
| Q |
301 |
gtcgtctcacctctccggtaaatctcccacctttccgttttccagaaggccgtttaagccacctgcactccggtcaattctccccgtgagtaccagctct |
400 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||| |||||||||||||||||||||||||| | ||||||||||||| |
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| T |
23171889 |
gtcgtctcacctctccggtaaatctcccacctctccgttttcgagaaggtcgtttaacccacctgcactccggtcaattctccctgcgagtaccagctct |
23171988 |
T |
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| Q |
401 |
tctctacaactcgtcgatatcaacgagagcaaaaggtacatgtaatttctcctcagagcccttgtttttg |
470 |
Q |
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| T |
23171989 |
tctttacaactcttcgatgtcaacgagagcaaaaggtacatgtaatttctcctcacagtccttgtttttg |
23172058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 222 - 340
Target Start/End: Original strand, 23220268 - 23220386
Alignment:
| Q |
222 |
tgttgcatctattttcatttccttgctccaaccctgcttctaccacaaccttcacttccccatttctcctccatactacgtcgtctcacctctccggtaa |
321 |
Q |
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||||||| | ||||||||||| ||||||||||| ||||||||||||| | || ||||| ||| |||||| |||||||||||| ||||||| | ||||| |
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| T |
23220268 |
tgttgcacccattttcatttcgttgctccaaccatgcttctaccacaccgtttccttccttattactcctcaatactacgtcgtttcacctcgcaggtaa |
23220367 |
T |
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| Q |
322 |
atctcccacctttccgttt |
340 |
Q |
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| T |
23220368 |
atctcccactttcccgttt |
23220386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 22302472 - 22302387
Alignment:
| Q |
1 |
atcattcatctatattatttaaaactaata-catggggtttactttaataatttt--attataaaatatttgttaaattgcaccaa |
83 |
Q |
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| T |
22302472 |
atcattcatctttattatttaaaactaatagcttgagggttactttagtaattttgcattaaaacatatttgttaacttgcaccaa |
22302387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 83
Target Start/End: Original strand, 16664505 - 16664585
Alignment:
| Q |
5 |
ttcatctatattatttaaaactaata-catggggtttactttaataa-ttttattataaaatatttgttaaattgcaccaa |
83 |
Q |
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||||||| ||||||| |||||||||| | || || |||||||||||| |||||| |||||||||||||||| |||||||| |
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| T |
16664505 |
ttcatctttattattaaaaactaatagcttgagggttactttaataacttttatgataaaatatttgttaatctgcaccaa |
16664585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 83
Target Start/End: Original strand, 17638875 - 17638955
Alignment:
| Q |
5 |
ttcatctatattatttaaaactaata-catggggtttactttaataa-ttttattataaaatatttgttaaattgcaccaa |
83 |
Q |
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||||||| ||||||| |||||||||| | || || |||||||||||| |||||| |||||||||||||||| |||||||| |
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| T |
17638875 |
ttcatctttattattaaaaactaatagcttgagggttactttaataacttttatgataaaatatttgttaatctgcaccaa |
17638955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 39586565 - 39586500
Alignment:
| Q |
1 |
atcattcatctatattatttaaaactaat-acatggggtttactttaataa-ttttattataaaat |
64 |
Q |
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||||||||||| ||||||||||||||||| || || || |||||||| ||| |||||||||||||| |
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| T |
39586565 |
atcattcatctttattatttaaaactaataacttgagggttactttagtaatttttattataaaat |
39586500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 83
Target Start/End: Complemental strand, 27587765 - 27587691
Alignment:
| Q |
11 |
tatattatttaaaactaata-catggggtttactttaataatttt-attataaaatatttgttaaattgcaccaa |
83 |
Q |
| |
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|||||||||||||||||||| | || || |||||||| ||||||| |||| || ||||||||||| ||||||||| |
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| T |
27587765 |
tatattatttaaaactaatagcttgagggttactttagtaattttcattaaaacatatttgttaatttgcaccaa |
27587691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 55273511 - 55273466
Alignment:
| Q |
39 |
ttactttaataatttt-attataaaatatttgttaaattgcaccaa |
83 |
Q |
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| T |
55273511 |
ttactttagtaatttttattataaaatatttgttaagttgcaccaa |
55273466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 5 - 83
Target Start/End: Original strand, 30208 - 30288
Alignment:
| Q |
5 |
ttcatctatattatttaaaactaata-catggggtttactttaataatttt-attataaaatatttgttaaattgcaccaa |
83 |
Q |
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||||||| |||||||||||||||||| | || | |||||||| ||||||| |||| || ||||||||||| ||||||||| |
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| T |
30208 |
ttcatctttattatttaaaactaatagcttgagcgttactttagtaattttcattaaaacatatttgttaacttgcaccaa |
30288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 5 - 80
Target Start/End: Original strand, 9208662 - 9208738
Alignment:
| Q |
5 |
ttcatctatattatttaaaactaata-catggggtttactttaataattttattataaaatatttgttaaattgcac |
80 |
Q |
| |
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||||||| |||||||||||||||||| | | || |||||||| |||||| |||| || ||||||||||| |||||| |
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| T |
9208662 |
ttcatctttattatttaaaactaatagctagagggttactttagtaatttcattaaaacatatttgttaatttgcac |
9208738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 5 - 83
Target Start/End: Complemental strand, 39460876 - 39460796
Alignment:
| Q |
5 |
ttcatctatattatttaaaactaata-catggggtttactttaataatttt-attataaaatatttgttaaattgcaccaa |
83 |
Q |
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||||||| |||||||||||||||||| | || || |||||||| ||||||| |||| || | ||||||||| ||||||||| |
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| T |
39460876 |
ttcatctttattatttaaaactaatagcttgagggttactttagtaattttcattaaaacagatttgttaacttgcaccaa |
39460796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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