View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11942_high_16 (Length: 478)

Name: NF11942_high_16
Description: NF11942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11942_high_16
NF11942_high_16
[»] chr4 (5 HSPs)
chr4 (299-461)||(21372931-21373093)
chr4 (299-461)||(21384465-21384626)
chr4 (15-156)||(21373756-21373897)
chr4 (191-303)||(21373614-21373726)
chr4 (22-147)||(36253104-36253228)
[»] chr3 (3 HSPs)
chr3 (15-148)||(54873628-54873761)
chr3 (15-148)||(55429825-55429958)
chr3 (81-144)||(40583947-40584010)
[»] chr6 (1 HSPs)
chr6 (15-148)||(7020703-7020834)
[»] chr8 (1 HSPs)
chr8 (15-148)||(15918936-15919070)
[»] chr2 (1 HSPs)
chr2 (15-148)||(37785267-37785400)


Alignment Details
Target: chr4 (Bit Score: 159; Significance: 2e-84; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 299 - 461
Target Start/End: Complemental strand, 21373093 - 21372931
Alignment:
Q  299 ttaaactttaaacaaataaagtggggcatataacttgtactactagtgggtaggagttgtatttggtggtgttgctgcagaagccacacgcttacctctc 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  21373093 ttaaactttaaacaaataaagtggggcatataacttgtactactagtgggtaggagttgtatttggtggtgttgctgcagaagccacacgctttcctctc 21372994  T
Q  399 tcagaacgactattctcagcaaacctaagacttggttgatgcaaacctttctgtacttcatct 461  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21372993 tcagaacgactattctcagcaaacctaagacttggttgatgcaaacctttctgtacttcatct 21372931  T

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Target: chr4; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 299 - 461
Target Start/End: Original strand, 21384465 - 21384626
Alignment:
Q  299 ttaaactttaaacaaa-taaagtggggcatataacttgtactactagtgggtaggagttgtatttggtggtgttgctgcagaagccacacgcttacctct 397  Q
    |||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  21384465 ttaaactttaaacaaaataaagtggggcata--acttgtactactagtgggtaggagttgtatttggtggtgttgctgcagaagccacacgctttcctct 21384562  T
Q  398 ctcagaacgactattctcagcaaacctaagacttggttgatgcaaacctttctgtacttcatct 461  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21384563 ctcagaacgactattctcagcaaacctaagacttggttgatgcaaacctttctgtacttcatct 21384626  T

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Target: chr4; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 15 - 156
Target Start/End: Complemental strand, 21373897 - 21373756
Alignment:
Q  15 atgaacgatagaagaaaatttattcactttgcctcttgcgatattagcagaagacctgaatctaaatttttgaatattaactttaaacccagaagcatag 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||      
T  21373897 atgaacgatagaagaaaatttattcactttgcctcttgcgatattagcagaagacatgaatctaaatttttgaatattaactttcaacccaaaagcatga 21373798  T
Q  115 caaaaactctctaacacctctttcactattctaggttgggag 156  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  21373797 caaaaactctctaacacctctttcactattctagcttgggag 21373756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 191 - 303
Target Start/End: Complemental strand, 21373726 - 21373614
Alignment:
Q  191 tgcttaaagtaattttgcctagaaagagctcaatgtgacgaatattgttgacaaagtcaaaattcattttgtatggtagattaaactttaaagcgaaatc 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21373726 tgcttaaagtaattttgcctagaaagagctcaatgtgacgaatattgttgacaaagtcaaaattcattttgtatggtagattaaactttaaagcgaaatc 21373627  T
Q  291 tcatggttttaaa 303  Q
    |||||||||||||    
T  21373626 tcatggttttaaa 21373614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 22 - 147
Target Start/End: Original strand, 36253104 - 36253228
Alignment:
Q  22 atagaagaaaatttattcactttgcctcttgcgatattagcagaagacctgaatctaaatttttgaatattaactttaaacccagaagcatagcaaaaac 121  Q
    ||||||| ||||||||||||||||  | | |  ||||||| |  |||| |||||||| ||||||||||||||||||| || ||||||||||  |||||||    
T  36253104 atagaagcaaatttattcactttgtttttggaaatattaggattagacatgaatctagatttttgaatattaacttttaa-ccagaagcatgacaaaaac 36253202  T
Q  122 tctctaacacctctttcactattcta 147  Q
    | |||| ||||||||||| |||||||    
T  36253203 tttctaccacctctttcaatattcta 36253228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 1e-45; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 15 - 148
Target Start/End: Complemental strand, 54873761 - 54873628
Alignment:
Q  15 atgaacgatagaagaaaatttattcactttgcctcttgcgatattagcagaagacctgaatctaaatttttgaatattaactttaaacccagaagcatag 114  Q
    |||||||||||||||||||||||||||||||| ||| | |||||||||||||||| |||||||| || |||||||||||||||| |||||||||||||      
T  54873761 atgaacgatagaagaaaatttattcactttgcttctagagatattagcagaagacatgaatctagatatttgaatattaactttcaacccagaagcatga 54873662  T
Q  115 caaaaactctctaacacctctttcactattctag 148  Q
    |||||||||||||| |||||||||||||||||||    
T  54873661 caaaaactctctaatacctctttcactattctag 54873628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 15 - 148
Target Start/End: Original strand, 55429825 - 55429958
Alignment:
Q  15 atgaacgatagaagaaaatttattcactttgcctcttgcgatattagcagaagacctgaatctaaatttttgaatattaactttaaacccagaagcatag 114  Q
    |||||||||||||||||||||||||||||||| ||| | |||||||||| ||||  |||||||| ||||||||||||||||||| |||||||||||||      
T  55429825 atgaacgatagaagaaaatttattcactttgcttctagagatattagcataagatatgaatctagatttttgaatattaacttttaacccagaagcatga 55429924  T
Q  115 caaaaactctctaacacctctttcactattctag 148  Q
    |||||||||| ||| |||||||||||||||||||    
T  55429925 caaaaactctttaagacctctttcactattctag 55429958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 40584010 - 40583947
Alignment:
Q  81 tttttgaatattaactttaaacccagaagcatagcaaaaactctctaacacctctttcactatt 144  Q
    |||||||||||||||||| |||| ||||||||  |||||||| ||||||| |||||||| ||||    
T  40584010 tttttgaatattaacttttaaccgagaagcattacaaaaactatctaacatctctttcattatt 40583947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 15 - 148
Target Start/End: Complemental strand, 7020834 - 7020703
Alignment:
Q  15 atgaacgatagaagaaaatttattcactttgcctcttgcgatattagcagaagacctgaatctaaatttttgaatattaactttaaacccagaagcatag 114  Q
    ||||||||||||||||||||||||||||||| |||| | |||||||||||||||| |||||||| |||| |||||||||||||| |||||||||||||      
T  7020834 atgaacgatagaagaaaatttattcactttgtctctggagatattagcagaagacatgaatctagatttctgaatattaactttcaacccagaagcatga 7020735  T
Q  115 caaaaactctctaacacctctttcactattctag 148  Q
    |||||||||||  |||||||||||||||||||||    
T  7020734 caaaaactctc--acacctctttcactattctag 7020703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 15 - 148
Target Start/End: Original strand, 15918936 - 15919070
Alignment:
Q  15 atgaacgatagaagaaaatttattcactttgcctcttgcgatattagcagaagacctgaatctaaatttttg-aatattaactttaaacccagaagcata 113  Q
    ||||| ||||||||||||||||||||||||   ||| | |||||||||||||||| ||||| || ||||||  |||||||||||| |||||||||||||     
T  15918936 atgaatgatagaagaaaatttattcactttttttctagagatattagcagaagacatgaatttagatttttttaatattaactttcaacccagaagcatg 15919035  T
Q  114 gcaaaaactctctaacacctctttcactattctag 148  Q
     ||||||||||||||||||| ||||||||||||||    
T  15919036 acaaaaactctctaacacctgtttcactattctag 15919070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 15 - 148
Target Start/End: Original strand, 37785267 - 37785400
Alignment:
Q  15 atgaacgatagaagaaaatttattcactttgcctcttgcgatattagcagaagacctgaatctaaatttttgaatattaactttaaacccagaagcatag 114  Q
    |||||| ||||||  |||||| |||||||||  ||| | |||||||| | || || |||||||| ||||||||||||||||||| || ||||||||||      
T  37785267 atgaacaatagaaacaaattttttcactttgtttctagagatattagtataaaacatgaatctagatttttgaatattaactttcaatccagaagcatga 37785366  T
Q  115 caaaaactctctaacacctctttcactattctag 148  Q
     |||| |||| |||||||||||||||||||||||    
T  37785367 aaaaatctctttaacacctctttcactattctag 37785400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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