View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11942_high_21 (Length: 415)
Name: NF11942_high_21
Description: NF11942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11942_high_21 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 39 - 401
Target Start/End: Original strand, 50679503 - 50679865
Alignment:
| Q |
39 |
ttccataatttaatagcaaagaaactataaagatcatcaattttgttaattatgttccttttttcttttatttcaaaagagcctaacaatgagattcaca |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50679503 |
ttccataatttaatagcaaagaaactataaagatcatcaattttgtaaattacgttccttttttcttttatttcaaaagagcctaacaatgagattcaca |
50679602 |
T |
|
| Q |
139 |
ttcactaaatattgaagagtggaaattttttggtttaaacatgtgtctcatcattcatatcaaatgtccatataattttttactatttgatatgtactaa |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
50679603 |
ttcactaaatattgaagagtggaaattttttggtttaaacatgtgtctcatcattcatataaaatgtccatataactttttactatttgatatgtactaa |
50679702 |
T |
|
| Q |
239 |
ggaataaagtattttctctttaattcataaaacatacaaaaatataagggaaaattagattcaccttccctcggttcgactattcttaaatagggcagat |
338 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
50679703 |
ggaattaagtattttctctttaattcataaaacatacaaaaatataagggaaaattagattcaccttccctcggttcggctattcttaaatagggcagat |
50679802 |
T |
|
| Q |
339 |
agtactatttgagcactgattattttctggtaaggtctccactttcactttatattgtcttcc |
401 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50679803 |
agtattatttgagcactgattattttctggtaaggtctccactttcactttatattgtcttcc |
50679865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University