View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11942_high_27 (Length: 324)
Name: NF11942_high_27
Description: NF11942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11942_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 76 - 308
Target Start/End: Complemental strand, 3959541 - 3959309
Alignment:
| Q |
76 |
cagtttacctcaaaatgggaacatagaaaacgagggaactaaagacacaaccagtattataaaccatgcctctgagttaaactttgttgtgtttcattct |
175 |
Q |
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| T |
3959541 |
cagtttacctcaaaatgggaacatagaaaaggagggaactaaagacacaaccagtattataaaccatgcctctgagttaaactttgttgtgtctcattca |
3959442 |
T |
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| Q |
176 |
gcaaaagggagctgcacctcactccagtcctattgatgacagtttatttactgagaataacagagatgacacctcaacagagtatcaaaatttagtcagc |
275 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3959441 |
gcaaaagggagctgcacctcactccagtcctgttgatgacagtttatttactgataataacagagatgacacctcaacagagtatcaaaatttagtcagc |
3959342 |
T |
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| Q |
276 |
attcaagcaaacaaagaggctgatgtgggatgt |
308 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
3959341 |
attcaagcaaacaaagaggctgatgtgggatgt |
3959309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 3959848 - 3959779
Alignment:
| Q |
8 |
aggagcagagaagaagggatatatttactatataagtttcaccaacgataaagggcatatatatgtacca |
77 |
Q |
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| T |
3959848 |
aggagcagaaaagaagggatatatttactatataagtttcaccaacgataaagggcatatatatgtacca |
3959779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 178 - 308
Target Start/End: Original strand, 19167758 - 19167888
Alignment:
| Q |
178 |
aaaagggagctgcacctcactccagtcctattgatgacagtttatttactgagaataacagagatgacacctcaacagagtatcaaaatttagtcagcat |
277 |
Q |
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| T |
19167758 |
aaaagggagttgcacctcactccaatcttgttgatgacagtttatttactgagaataacagagatgacagtttaacagagtatctaaatttagtcagcct |
19167857 |
T |
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| Q |
278 |
tcaagcaaacaaagaggctgatgtgggatgt |
308 |
Q |
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| | ||||||||||||||||||||||||||| |
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| T |
19167858 |
ttaggcaaacaaagaggctgatgtgggatgt |
19167888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 19167640 - 19167705
Alignment:
| Q |
76 |
cagtttacctcaaaat-gggaacatagaaaacgagggaactaaagacacaaccagtattataaacc |
140 |
Q |
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|||||||| ||||||| ||||||| ||||| || ||||||||||||||||||| ||||||||||| |
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| T |
19167640 |
cagtttacttcaaaattgggaacaaagaaatggaaggaactaaagacacaaccaatattataaacc |
19167705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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