View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11942_high_30 (Length: 308)

Name: NF11942_high_30
Description: NF11942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11942_high_30
NF11942_high_30
[»] chr4 (1 HSPs)
chr4 (7-93)||(53352057-53352143)
[»] chr5 (9 HSPs)
chr5 (7-139)||(38446950-38447073)
chr5 (165-225)||(38446887-38446947)
chr5 (7-60)||(26033649-26033702)
chr5 (7-60)||(38180554-38180607)
chr5 (7-60)||(38190524-38190577)
chr5 (7-60)||(38207778-38207831)
chr5 (7-60)||(38217749-38217802)
chr5 (7-60)||(38455914-38455967)
chr5 (251-293)||(38446846-38446888)
[»] chr1 (2 HSPs)
chr1 (11-97)||(38342277-38342366)
chr1 (11-97)||(38446470-38446559)


Alignment Details
Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 7 - 93
Target Start/End: Original strand, 53352057 - 53352143
Alignment:
Q  7 ttccacatatgcttttaatatttcatcctcttcttttgaccatgttccttttttcaaccctttattagtgtccgatgatgaagacat 93  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||    
T  53352057 ttccacatatgcttttaacatttcatcctcttcttttgaccattttccttttttcaaccctttgttagtatccgatgatgaagacat 53352143  T

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Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 7 - 139
Target Start/End: Complemental strand, 38447073 - 38446950
Alignment:
Q  7 ttccacatatgcttttaatatttcatcctcttcttttgaccatgttccttttttcaaccctttattagtgtcc---gatgatgaagacatgatgatgcta 103  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||         |||| ||  | ||   |||||||||||||||||||||       
T  38447073 ttccacatatgcttttaatatttcatcctcttcttttgaccattttccttt---------tttagtatcgaccgatgatgatgaagacatgatgatg--- 38446986  T
Q  104 atactaggtattgagtaaactgattttcaacccttc 139  Q
    ||||||||||||||||||||||||||||||||||||    
T  38446985 atactaggtattgagtaaactgattttcaacccttc 38446950  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 38446947 - 38446887
Alignment:
Q  165 tgtgagaaactcaaatttataagtattgagtaaactgattttcctaagtactaggggagta 225  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  38446947 tgtgagaaaatcaaatttataagtattgagtaaactgattttcctaagtaccaggggagta 38446887  T

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Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 26033649 - 26033702
Alignment:
Q  7 ttccacatatgcttttaatatttcatcctcttcttttgaccatgttcctttttt 60  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26033649 ttccacatatgcttttaatatttcatcttcttcttttgaccatgttcctttttt 26033702  T

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Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 38180607 - 38180554
Alignment:
Q  7 ttccacatatgcttttaatatttcatcctcttcttttgaccatgttcctttttt 60  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  38180607 ttccacatatgcttttaatatttcatcttcttcttttgaccatgttcctttttt 38180554  T

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Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 38190524 - 38190577
Alignment:
Q  7 ttccacatatgcttttaatatttcatcctcttcttttgaccatgttcctttttt 60  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  38190524 ttccacatatgcttttaatatttcatcttcttcttttgaccatgttcctttttt 38190577  T

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Target: chr5; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 38207831 - 38207778
Alignment:
Q  7 ttccacatatgcttttaatatttcatcctcttcttttgaccatgttcctttttt 60  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  38207831 ttccacatatgcttttaatatttcatcttcttcttttgaccatgttcctttttt 38207778  T

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Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 38217749 - 38217802
Alignment:
Q  7 ttccacatatgcttttaatatttcatcctcttcttttgaccatgttcctttttt 60  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  38217749 ttccacatatgcttttaatatttcatcttcttcttttgaccatgttcctttttt 38217802  T

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Target: chr5; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 38455967 - 38455914
Alignment:
Q  7 ttccacatatgcttttaatatttcatcctcttcttttgaccatgttcctttttt 60  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  38455967 ttccacatatgcttttaatatttcatcttcttcttttgaccatgttcctttttt 38455914  T

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Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 251 - 293
Target Start/End: Complemental strand, 38446888 - 38446846
Alignment:
Q  251 tacaaaattatctaatagtcatcaaactaacgattaactgtct 293  Q
    ||||||||||||| |||||||||||||||||||||||||||||    
T  38446888 tacaaaattatctcatagtcatcaaactaacgattaactgtct 38446846  T

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Target: chr1 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 11 - 97
Target Start/End: Complemental strand, 38342366 - 38342277
Alignment:
Q  11 acatatgcttttaatatttcatcctcttcttttgacc---atgttccttttttcaaccctttattagtgtccgatgatgaagacatgatg 97  Q
    |||||||||||||||||||||||||||||||||||||   |||||||||| ||||||| ||||||||| || || ||||||| |||||||    
T  38342366 acatatgcttttaatatttcatcctcttcttttgaccataatgttcctttcttcaaccttttattagtatcggacgatgaaggcatgatg 38342277  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 11 - 97
Target Start/End: Complemental strand, 38446559 - 38446470
Alignment:
Q  11 acatatgcttttaatatttcatcctcttcttttgacc---atgttccttttttcaaccctttattagtgtccgatgatgaagacatgatg 97  Q
    |||||||||||||||||||||||||||||||||||||   |||||||||| ||||||| ||||||||| || || ||||||| |||||||    
T  38446559 acatatgcttttaatatttcatcctcttcttttgaccataatgttcctttcttcaaccttttattagtatcggacgatgaaggcatgatg 38446470  T

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