View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11942_high_31 (Length: 306)
Name: NF11942_high_31
Description: NF11942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11942_high_31 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 4e-78; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 17 - 176
Target Start/End: Original strand, 27954357 - 27954516
Alignment:
| Q |
17 |
gttattgctgcatcgtaaatatgaatggtgtgttcacctacttggtcctttcgggtgtggcaattgtagctgtcatgctaagctggttagccgtgtgata |
116 |
Q |
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| T |
27954357 |
gttattgttgcatcgtaaatatgaatggtgtgttcacctacttggtcctttcgggtgtggcaattgtagttgtcatgctaagctggctagccgtgtgata |
27954456 |
T |
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| Q |
117 |
agatgatcaattgcttgcttgattcgttgtttactcaatcgataaaatgatatgcagact |
176 |
Q |
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| T |
27954457 |
agatgatcaattgcttgcttgattcgttgtttactcaatcgataaaatgatatgcagact |
27954516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 171 - 253
Target Start/End: Original strand, 27954926 - 27955008
Alignment:
| Q |
171 |
cagactatttttcacttgcgaccatgatcccttttataatcaagcgattatgatgagaaatgaattttgtttctcatttatgg |
253 |
Q |
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| T |
27954926 |
cagactatttttcacttgagaccatgatcccttttataatcaagcgattatgatgagaaatgatttttgtttctcatttatgg |
27955008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 255 - 303
Target Start/End: Original strand, 27957293 - 27957341
Alignment:
| Q |
255 |
cggcccgcaaaagcccgaaaaaatgtagggcttggacacaaaaacttgg |
303 |
Q |
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| T |
27957293 |
cggcccgcaaaagcccgaaaaaatgtagggcttggacacaaaaacttgg |
27957341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 306
Target Start/End: Complemental strand, 34958491 - 34958447
Alignment:
| Q |
262 |
caaaagcccgaaaaaatgtagggcttggacacaaaaacttggacc |
306 |
Q |
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| T |
34958491 |
caaaagcccgaaaaaatgtagggtttgaacacaaaaatttggacc |
34958447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 298
Target Start/End: Original strand, 21427463 - 21427506
Alignment:
| Q |
255 |
cggcccgcaaaagcccgaaaaaatgtagggcttggacacaaaaa |
298 |
Q |
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| T |
21427463 |
cggcccacaaaagcccaaaaaaatgtagggtttggacacaaaaa |
21427506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 306
Target Start/End: Complemental strand, 19719429 - 19719378
Alignment:
| Q |
255 |
cggcccgcaaaagcccgaaaaaatgtagggcttggacacaaaaacttggacc |
306 |
Q |
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| T |
19719429 |
cggcccgcaaaagctcgaaaaaacgtagggcttgaacataaaaaattggacc |
19719378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 252 - 303
Target Start/End: Original strand, 33165711 - 33165762
Alignment:
| Q |
252 |
ggtcggcccgcaaaagcccgaaaaaatgtagggcttggacacaaaaacttgg |
303 |
Q |
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| T |
33165711 |
ggtcggcccgcaaaagcccaaaaaaacgtagggtttggacataaaaatttgg |
33165762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 298
Target Start/End: Original strand, 24027011 - 24027047
Alignment:
| Q |
262 |
caaaagcccgaaaaaatgtagggcttggacacaaaaa |
298 |
Q |
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| T |
24027011 |
caaaagcccgaaaaaattcagggcttggacacaaaaa |
24027047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 303
Target Start/End: Complemental strand, 24739106 - 24739065
Alignment:
| Q |
262 |
caaaagcccgaaaaaatgtagggcttggacacaaaaacttgg |
303 |
Q |
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| T |
24739106 |
caaaatcccgaaaaaatgcagggcttggacacaaaaatttgg |
24739065 |
T |
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