View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11942_high_4 (Length: 758)

Name: NF11942_high_4
Description: NF11942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11942_high_4
NF11942_high_4
[»] chr3 (21 HSPs)
chr3 (19-748)||(47763757-47764458)
chr3 (72-296)||(24761780-24761997)
chr3 (72-232)||(53027635-53027786)
chr3 (72-295)||(12538519-12538733)
chr3 (74-202)||(53352645-53352765)
chr3 (72-296)||(24815937-24816149)
chr3 (312-465)||(50719089-50719236)
chr3 (312-465)||(50793612-50793759)
chr3 (68-193)||(53351054-53351170)
chr3 (180-295)||(17681790-17681905)
chr3 (23-105)||(53352519-53352601)
chr3 (165-295)||(31685100-31685230)
chr3 (23-110)||(24761656-24761743)
chr3 (178-232)||(19882091-19882145)
chr3 (178-295)||(53973266-53973384)
chr3 (175-255)||(32015668-32015748)
chr3 (418-462)||(50719046-50719090)
chr3 (418-462)||(50793758-50793802)
chr3 (23-110)||(24816186-24816273)
chr3 (178-232)||(37982436-37982490)
chr3 (223-269)||(53351960-53352006)
[»] chr8 (10 HSPs)
chr8 (156-300)||(5662584-5662728)
chr8 (312-461)||(9885367-9885511)
chr8 (341-461)||(4969940-4970060)
chr8 (175-295)||(8158484-8158604)
chr8 (165-295)||(27541527-27541656)
chr8 (165-295)||(14677989-14678119)
chr8 (165-295)||(5657794-5657924)
chr8 (426-472)||(9885522-9885569)
chr8 (662-722)||(21547067-21547127)
chr8 (426-472)||(4969882-4969929)
[»] chr1 (4 HSPs)
chr1 (336-472)||(52945841-52945976)
chr1 (336-472)||(52938209-52938344)
chr1 (341-474)||(44513221-44513354)
chr1 (175-295)||(25223242-25223363)
[»] chr5 (6 HSPs)
chr5 (68-295)||(22004336-22004554)
chr5 (175-295)||(30463028-30463149)
chr5 (165-295)||(22009496-22009626)
chr5 (178-232)||(9043889-9043943)
chr5 (178-232)||(30442527-30442581)
chr5 (178-232)||(7473469-7473523)
[»] chr2 (8 HSPs)
chr2 (165-295)||(24454538-24454668)
chr2 (341-465)||(27534858-27534982)
chr2 (180-256)||(997882-997958)
chr2 (426-474)||(27534772-27534821)
chr2 (178-232)||(12741775-12741829)
chr2 (178-232)||(23348960-23349014)
chr2 (165-231)||(1615883-1615948)
chr2 (178-231)||(18355293-18355346)
[»] scaffold0096 (1 HSPs)
scaffold0096 (72-295)||(27433-27650)
[»] chr7 (5 HSPs)
chr7 (341-460)||(2439964-2440083)
chr7 (165-295)||(1262111-1262241)
chr7 (165-295)||(26909949-26910079)
chr7 (178-232)||(43071362-43071416)
chr7 (165-230)||(48849775-48849839)
[»] chr6 (2 HSPs)
chr6 (165-295)||(33045399-33045529)
chr6 (156-202)||(8976521-8976567)
[»] scaffold0035 (1 HSPs)
scaffold0035 (165-295)||(35086-35216)
[»] scaffold0596 (1 HSPs)
scaffold0596 (178-232)||(741-795)
[»] chr4 (2 HSPs)
chr4 (165-232)||(29863329-29863395)
chr4 (243-288)||(38014371-38014415)


Alignment Details
Target: chr3 (Bit Score: 582; Significance: 0; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 19 - 748
Target Start/End: Original strand, 47763757 - 47764458
Alignment:
Q  19 tatacatcatgtatcatggatataataactctacattgatataacacaaaagcttgggaaacaataacaatatttaatgcaatcatgaaaggtggaaagc 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  47763757 tatacatcatgtatcatggatataataactctacattgatataacacaaaagctagggaaacaataacaatatttaatgcaatcatgaaaggtggaaagc 47763856  T
Q  119 cataactaaaagcatttaaggtatcagactatcaggtatggggaaatgaaagtttgaagtcagattagatcaaaggatgagatgaatgcctagccagatg 218  Q
    ||||||||| |||||||||||||||||        ||||||||||||||||||||||||||||||             ||||||||||||||||||||||    
T  47763857 cataactaagagcatttaaggtatcag--------gtatggggaaatgaaagtttgaagtcagat-------------gagatgaatgcctagccagatg 47763935  T
Q  219 atttgatccaacggacctccttgattggcgcctaaaaattctaggtttaggttttgcaaagttattagcaatgttaagtagggattaaatataaactaga 318  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  47763936 atttgatccaacggacctccttgattggcgcctaaaaattctagatttaggttttgcaaagttattagcaatgttaagtagg-attagatataaactaga 47764034  T
Q  319 acgccgacccgtgcctcgcggggcacgggtcatataaattgtagaaactaaaaataatatagaaatttgtataagtcttcatagcagtaagtcattagta 418  Q
    |||||  |||||||       ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47764035 acgccctcccgtgca------ggcacgggtcatatagattgtagaaattaaaaataatatagaaatttgtataagtcttcatagcagtaagtcattagta 47764128  T
Q  419 cggtgataaagatagtgtattacatcattcatacaaataaaaaagactataaatctatataattctatgaatggcattccaaaaaatagcaaatcattaa 518  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47764129 cggtaataaagatagtgtattacatcattcatacaaataaaaaagactataaatctatataattctatgaatggcattccaaaaaatagcaaatcattaa 47764228  T
Q  519 ctcccagttcaatggaataaaaatcaatagtagtatatttgtacagctcgattacatagagatttttattcctctaacccaaatctcaaattgcttaaga 618  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47764229 ctcccagttcaatggaataaaaatcaatagtagtatatttgtacagctcgattacatagagatttttattcctctaacccaaatctcaaattgcttaaga 47764328  T
Q  619 gatgagcagaacatcagctgccatcataattgtttgatagaataaattcttgtgaaacactaaaaattaaaacaaaaacatcaaatagatgctcctcgtc 718  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47764329 gatgagcagaacatcagctgccatcataattgtttgatagaataaattcttgtgaaacactaaaaattaaaacaaaaacatcaaatagatgctcctcgtc 47764428  T
Q  719 aacatcaattatggcaattctaatcctttg 748  Q
    |||||||||| |||||||||||||||||||    
T  47764429 aacatcaattttggcaattctaatcctttg 47764458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 72 - 296
Target Start/End: Original strand, 24761780 - 24761997
Alignment:
Q  72 ttgggaaacaataacaatatttaatgcaatcatgaaaggtggaaagccataactaaaagcatttaaggtatcagactatcaggtatggggaaatgaaagt 171  Q
    ||||||||||||||||| |||||||| | ||||||||||||||||| ||||||||| |||| |||| ||||||| |        |||||||||| |||||    
T  24761780 ttgggaaacaataacaacatttaatgtactcatgaaaggtggaaagtcataactaagagcaattaatgtatcaggc--------atggggaaataaaagt 24761871  T
Q  172 ttgaagtcagattagatcaaaggatgagatgaatgcctagccagatgatttgatccaacggacctccttg-attggcgcctaaaaattctaggtttaggt 270  Q
    ||||||||| ||||||||||||||||||||| ||||  ||||| |||||  |||||||||| |  | |||  |||| ||| |||   | ||||||||||     
T  24761872 ttgaagtcaaattagatcaaaggatgagatgcatgctgagccaaatgatgagatccaacggtcagcattgttttggagccaaaaccatttaggtttaggg 24761971  T
Q  271 tttgcaaagttattagcaatgttaag 296  Q
    |||||||||| |||||||||||||||    
T  24761972 tttgcaaagtcattagcaatgttaag 24761997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 72 - 232
Target Start/End: Original strand, 53027635 - 53027786
Alignment:
Q  72 ttgggaaacaataacaatatttaatgcaatcatgaaaggtggaaagccataactaaaagcatttaaggtatcagactatcaggtatggggaaatgaaagt 171  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| || |||||| ||||||    | ||      ||||||| |||||    
T  53027635 ttgggaaacaataacaacatttaatgcactcatgaaaggtggaaagccataactaagagaatttaatgtatca----agca-----tgggaaataaaagt 53027725  T
Q  172 ttgaagtcagattagatcaaaggatgagatgaatgcctagccagatgatttgatccaacgg 232  Q
    ||||||||| ||||||||||||||||||||| ||||  ||||| |||||  ||||||||||    
T  53027726 ttgaagtcaaattagatcaaaggatgagatgcatgctgagccaaatgatgagatccaacgg 53027786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 72 - 295
Target Start/End: Original strand, 12538519 - 12538733
Alignment:
Q  72 ttgggaaacaataacaatatttaatgcaatcatgaaaggtggaaagccataactaaaagcatttaaggtatcagactatcaggtatggggaaatgaaagt 171  Q
    ||||||||||| |||||||||||||| | ||||||| ||||||||||||||||||| |||||||||     ||   ||||||| || ||||| |||||||    
T  12538519 ttgggaaacaacaacaatatttaatgtagtcatgaatggtggaaagccataactaagagcatttaa-----ca---tatcaggcat-gggaattgaaagt 12538609  T
Q  172 ttgaagtcagattagatcaaaggatgagatgaatgcctagccagatgatttgatccaacggacctccttgattggcgcctaaaaattctaggtttaggtt 271  Q
    ||||||| | |||||||||||||||| |||| |||| |||||| |||||  |||||||||| |  ||||| |||| ||| |||   | |||||||||| |    
T  12538610 ttgaagttaaattagatcaaaggatgtgatgcatgcttagccaaatgatgagatccaacggcctcccttgtttggagccaaaaccatttaggtttagggt 12538709  T
Q  272 ttgcaaagttattagcaatgttaa 295  Q
    ||||||| | ||||| || |||||    
T  12538710 ttgcaaaatcattagaaaggttaa 12538733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 74 - 202
Target Start/End: Original strand, 53352645 - 53352765
Alignment:
Q  74 gggaaacaataacaatatttaatgcaatcatgaaaggtggaaagccataactaaaagcatttaaggtatcagactatcaggtatggggaaatgaaagttt 173  Q
    ||||||||||||||| |||||||| | ||||||||||||||||||||||||||| ||||||||| |        ||||||| ||| |||||| |||||||    
T  53352645 gggaaacaataacaacatttaatgtactcatgaaaggtggaaagccataactaagagcatttaatg--------tatcaggcatgaggaaataaaagttt 53352736  T
Q  174 gaagtcagattagatcaaaggatgagatg 202  Q
    ||||||| |||| ||||||||||||||||    
T  53352737 gaagtcaaattaaatcaaaggatgagatg 53352765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 72 - 296
Target Start/End: Complemental strand, 24816149 - 24815937
Alignment:
Q  72 ttgggaaacaataacaatatttaatgcaatcatgaaaggtggaaagccataactaaaagcatttaaggtatcagactatcaggtatggggaaatgaaagt 171  Q
    ||||||||||||||||| |||||||| | ||||||||||||||||||||||||||| |||| |||| ||             | |||||||||| |||||    
T  24816149 ttgggaaacaataacaacatttaatgtactcatgaaaggtggaaagccataactaagagcaattaatgt-------------gcatggggaaataaaagt 24816063  T
Q  172 ttgaagtcagattagatcaaaggatgagatgaatgcctagccagatgatttgatccaacggacctccttg-attggcgcctaaaaattctaggtttaggt 270  Q
    ||||||||| ||||||||||||||||||||| ||||  ||||| |||||  |||||||||| |  | | |  |||| ||| |||   | ||||||||||     
T  24816062 ttgaagtcaaattagatcaaaggatgagatgcatgctgagccaaatgatgagatccaacggccagcatcgttttggagccaaaaccatttaggtttaggg 24815963  T
Q  271 tttgcaaagttattagcaatgttaag 296  Q
    |||||||||| |||||||||||||||    
T  24815962 tttgcaaagtcattagcaatgttaag 24815937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 312 - 465
Target Start/End: Complemental strand, 50719236 - 50719089
Alignment:
Q  312 aactagaacgccgacccgtgcctcgcggggcacgggtcatataaattgtagaaactaaaaataatatagaaatttgtataagtcttcatagcagtaagtc 411  Q
    |||||||||||||||||||||  |||     |||||||||||| |||||||||||  | ||||||||| |||| | || |||    | ||||| ||||||    
T  50719236 aactagaacgccgacccgtgcgccgc-----acgggtcatatagattgtagaaaccgacaataatataaaaatctatagaag----cgtagcaataagtc 50719146  T
Q  412 attagtacggt---gataaagatagtgtattacatcattcatacaaataaaaaagac 465  Q
    ||||||||  |   ||| |||||||||||||||||||||||||||||||||||||||    
T  50719145 attagtacaataatgatgaagatagtgtattacatcattcatacaaataaaaaagac 50719089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 312 - 465
Target Start/End: Original strand, 50793612 - 50793759
Alignment:
Q  312 aactagaacgccgacccgtgcctcgcggggcacgggtcatataaattgtagaaactaaaaataatatagaaatttgtataagtcttcatagcagtaagtc 411  Q
    |||||||||||||||||||||  |||     |||||||||||| |||||||||||  | ||||||||| |||| | || |||    | ||||| ||||||    
T  50793612 aactagaacgccgacccgtgcgccgc-----acgggtcatatagattgtagaaaccgacaataatataaaaatctatagaag----cgtagcaataagtc 50793702  T
Q  412 attagtacggt---gataaagatagtgtattacatcattcatacaaataaaaaagac 465  Q
    ||||||||  |   ||| |||||||||||||||||||||||||||||||||||||||    
T  50793703 attagtacaataatgatgaagatagtgtattacatcattcatacaaataaaaaagac 50793759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 193
Target Start/End: Original strand, 53351054 - 53351170
Alignment:
Q  68 aagcttgggaaacaataacaatatttaatgcaatcatgaaaggtggaaagccataactaaaagcatttaaggtatcagactatcaggtatggggaaatga 167  Q
    ||||||||||||||||||||| |||||||| | |||||||   |||||||||||||| || |||||  | |         ||||||||||||||||||||    
T  53351054 aagcttgggaaacaataacaacatttaatgtactcatgaacattggaaagccataaccaagagcatcaacg---------tatcaggtatggggaaatga 53351144  T
Q  168 aagtttgaagtcagattagatcaaag 193  Q
    || |||||||||| ||||||||||||    
T  53351145 aactttgaagtcacattagatcaaag 53351170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 180 - 295
Target Start/End: Complemental strand, 17681905 - 17681790
Alignment:
Q  180 agattagatcaaaggatgagatgaatgcctagccagatgatttgatccaacggacctccttgattggcgcctaaaaattctaggtttaggttttgcaaag 279  Q
    ||||||||||||||||||||||| |||| || ||| |||||  |||||||||| || ||||| |||| ||| |||   | |||||||||| ||||||||     
T  17681905 agattagatcaaaggatgagatgcatgcttaaccaaatgatgagatccaacggccccccttgtttggagccaaaaccatttaggtttagggtttgcaaaa 17681806  T
Q  280 ttattagcaatgttaa 295  Q
    | |||| |||||||||    
T  17681805 tcattaacaatgttaa 17681790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 105
Target Start/End: Original strand, 53352519 - 53352601
Alignment:
Q  23 catcatgtatcatggatataataactctacattgatataacacaaaagcttgggaaacaataacaatatttaatgcaatcatg 105  Q
    ||||||||||||||||||| ||| || |||||||  ||||||||||||| | ||||| | |||||| ||| ||||||||||||    
T  53352519 catcatgtatcatggatatcatacctatacattggaataacacaaaagcattggaaatactaacaacattaaatgcaatcatg 53352601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 295
Target Start/End: Complemental strand, 31685230 - 31685100
Alignment:
Q  165 tgaaagtttgaagtcagattagatcaaaggatgagatgaatgcctagccagatgatttgatccaacggacctccttga--ttggcgcctaaaaattctag 262  Q
    |||||||||||  ||||||||||||||||||||||||| |||| |||||| |||||  ||| |||||| ||||| | |  |||| ||| |||   | |||    
T  31685230 tgaaagtttgac-tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagattcaacgg-cctcccttattttggagccaaaaccatttag 31685133  T
Q  263 gtttaggttttgcaaagttattagcaatgttaa 295  Q
    ||||||| |||||||||| ||||||||||||||    
T  31685132 gtttagggtttgcaaagtcattagcaatgttaa 31685100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 24761656 - 24761743
Alignment:
Q  23 catcatgtatcatggatataataactctacattgatataacacaaaagcttgggaaacaataacaatatttaatgcaatcatgaaagg 110  Q
    ||||||||||||||||||| ||| || |||||||  ||||||||||||| | ||||| | |||||| ||| ||| |||||||| ||||    
T  24761656 catcatgtatcatggatatcatacctatacattggaataacacaaaagcattggaaatactaacaacattaaattcaatcatggaagg 24761743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 232
Target Start/End: Original strand, 19882091 - 19882145
Alignment:
Q  178 tcagattagatcaaaggatgagatgaatgcctagccagatgatttgatccaacgg 232  Q
    ||||||||||||||||||||||||| |||| |||||| |||||  ||||||||||    
T  19882091 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacgg 19882145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 295
Target Start/End: Original strand, 53973266 - 53973384
Alignment:
Q  178 tcagattagatcaaaggatgagatgaatgcctagccagatgatttgatccaacggacctccttga-ttggcgcctaaaaattctaggtttaggttttgca 276  Q
    ||||||||||||||||||||||||| | || |||||| |||||  |||||||||| |  |||||| |||| ||| |||   | |||||||||| ||||||    
T  53973266 tcagattagatcaaaggatgagatgcaggcttagccaaatgatgagatccaacggcctcccttgatttggagccaaaaccatttaggtttagggtttgca 53973365  T
Q  277 aagttattagcaatgttaa 295  Q
    |  | ||||||||||||||    
T  53973366 atttcattagcaatgttaa 53973384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 32015668 - 32015748
Alignment:
Q  175 aagtcagattagatcaaaggatgagatgaatgcctagccagatgatttgatccaacggacctccttgattggcgcctaaaa 255  Q
    |||||| || ||||||||||||||||||||||  |||| || | |||||||| |||||  |||||| ||||||||| ||||    
T  32015668 aagtcaaatgagatcaaaggatgagatgaatgtttagctagctcatttgatcaaacggctctccttaattggcgcccaaaa 32015748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 418 - 462
Target Start/End: Complemental strand, 50719090 - 50719046
Alignment:
Q  418 acggtgataaagatagtgtattacatcattcatacaaataaaaaa 462  Q
    ||||| ||||||||||| ||||||||| |||||||||||||||||    
T  50719090 acggtaataaagatagtatattacatctttcatacaaataaaaaa 50719046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 418 - 462
Target Start/End: Original strand, 50793758 - 50793802
Alignment:
Q  418 acggtgataaagatagtgtattacatcattcatacaaataaaaaa 462  Q
    ||||| ||||||||||| ||||||||| |||||||||||||||||    
T  50793758 acggtaataaagatagtatattacatctttcatacaaataaaaaa 50793802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 24816273 - 24816186
Alignment:
Q  23 catcatgtatcatggatataataactctacattgatataacacaaaagcttgggaaacaataacaatatttaatgcaatcatgaaagg 110  Q
    ||||||||||||||||||| ||| || |||||||  ||||||||||| | | ||||| | |||||  ||| |||||||||||| ||||    
T  24816273 catcatgtatcatggatatcatacctatacattggaataacacaaaaacattggaaatactaacatcattaaatgcaatcatggaagg 24816186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 178 - 232
Target Start/End: Complemental strand, 37982490 - 37982436
Alignment:
Q  178 tcagattagatcaaaggatgagatgaatgcctagccagatgatttgatccaacgg 232  Q
    ||||||||||| ||||||||||||| |||| |||||| |||||  ||||||||||    
T  37982490 tcagattagattaaaggatgagatgcatgcttagccaaatgatgagatccaacgg 37982436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 223 - 269
Target Start/End: Original strand, 53351960 - 53352006
Alignment:
Q  223 gatccaacggacctccttgattggcgcctaaaaattctaggtttagg 269  Q
    ||||||||||||| ||||||||||||||||||   ||||||||||||    
T  53351960 gatccaacggaccaccttgattggcgcctaaactatctaggtttagg 53352006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 105; Significance: 5e-52; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 156 - 300
Target Start/End: Complemental strand, 5662728 - 5662584
Alignment:
Q  156 atggggaaatgaaagtttgaagtcagattagatcaaaggatgagatgaatgcctagccagatgatttgatccaacggacctccttgattggcgcctaaaa 255  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||  |||| ||||||||||||||||||||||||||||    
T  5662728 atggggaaatgaaagtttgaagtcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttgattggcgcctaaaa 5662629  T
Q  256 attctaggtttaggttttgcaaagttattagcaatgttaagtagg 300  Q
    | |||||||||||| |||||||||| ||||||||| |||| ||||    
T  5662628 aatctaggtttagggtttgcaaagtcattagcaatattaattagg 5662584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 312 - 461
Target Start/End: Original strand, 9885367 - 9885511
Alignment:
Q  312 aactagaacgccgacccgtgcctcgcggggcacgggtcatataaattgtagaaactaaaaataatatagaaatttgtataagtcttcatagcagtaagtc 411  Q
    |||||||||||||||||||||  |||     |||||||||||| |||||| ||||  | |||||||| |||||||||| |||||||||||||| ||||||    
T  9885367 aactagaacgccgacccgtgcgccgc-----acgggtcatatagattgtacaaaccgacaataatattgaaatttgtagaagtcttcatagcaataagtc 9885461  T
Q  412 attagtacggtgataaagatagtgtattacatcattcatacaaataaaaa 461  Q
    |||||||| || |||||||||||| |||||||||||||||||||||||||    
T  9885462 attagtacagtaataaagatagtgcattacatcattcatacaaataaaaa 9885511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 341 - 461
Target Start/End: Complemental strand, 4970060 - 4969940
Alignment:
Q  341 gcacgggtcatataaattgtagaaactaaaaataatatagaaatttgtataagtcttcatagcagtaagtcattagtacggtgataaagatagtgtatta 440  Q
    |||||||||||||| |||||| ||||  | |||||||| |||||||||| |||||||||||||| |||||||||||||| || |||||||||||| ||||    
T  4970060 gcacgggtcatatagattgtacaaaccgacaataatattgaaatttgtagaagtcttcatagcaataagtcattagtacagtaataaagatagtgcatta 4969961  T
Q  441 catcattcatacaaataaaaa 461  Q
    |||||||||||||||||||||    
T  4969960 catcattcatacaaataaaaa 4969940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 175 - 295
Target Start/End: Complemental strand, 8158604 - 8158484
Alignment:
Q  175 aagtcagattagatcaaaggatgagatgaatgcctagccagatgatttgatccaacggacctccttgattggcgcctaaaaattctaggtttaggttttg 274  Q
    ||||||||||||||||||||||||||||||||  |||| || | |||||||| ||||| ||| ||| ||||||||| ||||    |||||||||||||||    
T  8158604 aagtcagattagatcaaaggatgagatgaatgattagctagctcatttgatcaaacggccctgcttaattggcgcccaaaatacttaggtttaggttttg 8158505  T
Q  275 caaagttattagcaatgttaa 295  Q
    ||| || ||||||| ||||||    
T  8158504 caaggtaattagcattgttaa 8158484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 165 - 295
Target Start/End: Original strand, 27541527 - 27541656
Alignment:
Q  165 tgaaagtttgaagtcagattagatcaaaggatgagatgaatgcctagccagatgatttgatccaacggacctccttgattggcgcctaaaaattctaggt 264  Q
    |||||||||||  ||||||||||||||||||||||||| |||| |||||| |||||  ||||||||||    ||||| |||| ||| ||    | |||||    
T  27541527 tgaaagtttgat-tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcgtcccttgtttggagccaaagccatttaggt 27541625  T
Q  265 ttaggttttgcaaagttattagcaatgttaa 295  Q
    ||||| |||||||||| ||||||||||||||    
T  27541626 ttagggtttgcaaagtcattagcaatgttaa 27541656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 165 - 295
Target Start/End: Original strand, 14677989 - 14678119
Alignment:
Q  165 tgaaagtttgaagtcagattagatcaaaggatgagatgaatgcctagccagatgatttgatccaacggacctccttg-attggcgcctaaaaattctagg 263  Q
    |||||||||||  ||||||||||||||||||||||||| |||| |||||| |||||  |||||||||| |  |||||  |||| ||| |||   | ||||    
T  14677989 tgaaagtttgac-tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttagg 14678087  T
Q  264 tttaggttttgcaaagttattagcaatgttaa 295  Q
    |||||| ||| |||||| ||||||||||||||    
T  14678088 tttagggttttcaaagtcattagcaatgttaa 14678119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 165 - 295
Target Start/End: Complemental strand, 5657924 - 5657794
Alignment:
Q  165 tgaaagtttgaagtcagattagatcaaaggatgagatgaatgcctagccagatgatttgatccaacggacctccttg-attggcgcctaaaaattctagg 263  Q
    |||||||||||  ||||||||||||||||||||||||| |||| || ||| |||||  |||||||||| |  |||||  |||| ||| |||   | ||||    
T  5657924 tgaaagtttgac-tcagattagatcaaaggatgagatgcatgcttaaccaaatgatgagatccaacggcctcccttgttttggagccaaaactatttagg 5657826  T
Q  264 tttaggttttgcaaagttattagcaatgttaa 295  Q
    |||||| |||||||||| |||||||| |||||    
T  5657825 tttagggtttgcaaagtcattagcaacgttaa 5657794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 426 - 472
Target Start/End: Original strand, 9885522 - 9885569
Alignment:
Q  426 aaagatagtgtattacatcattcatacaaat-aaaaaagactataaat 472  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  9885522 aaagatagtatattacatcattcatacaaataaaaaaagactataaat 9885569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 662 - 722
Target Start/End: Original strand, 21547067 - 21547127
Alignment:
Q  662 aaattcttgtgaaacactaaaaattaaaacaaaaacatcaaatagatgctcctcgtcaaca 722  Q
    ||||| |||| |||||| ||| || ||||||||||||  ||||||||||||||||||||||    
T  21547067 aaatttttgttaaacacaaaagatcaaaacaaaaacagaaaatagatgctcctcgtcaaca 21547127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 426 - 472
Target Start/End: Complemental strand, 4969929 - 4969882
Alignment:
Q  426 aaagatagtgtattacatcattcatacaaataa-aaaagactataaat 472  Q
    ||||||||| ||||||||||||| ||||||||| ||||||||||||||    
T  4969929 aaagatagtatattacatcattcgtacaaataaaaaaagactataaat 4969882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 3e-47; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 336 - 472
Target Start/End: Complemental strand, 52945976 - 52945841
Alignment:
Q  336 gcggggcacgggtcatataaattgtagaaactaaaaataatatagaaatttgtataagtcttcatagcagtaagtcattagtacggtgataaagatagtg 435  Q
    |||| |||||||||||||| |||||||||||  | ||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||    
T  52945976 gcggcgcacgggtcatatagattgtagaaaccgacaataatatagaaatttgtataagccttcatagcaataagtcattagtacggtaataaagatagtg 52945877  T
Q  436 tattacatcattcatacaaataaaaaagactataaat 472  Q
    |||||||||||||||||||||| ||||||||||||||    
T  52945876 tattacatcattcatacaaata-aaaagactataaat 52945841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 336 - 472
Target Start/End: Complemental strand, 52938344 - 52938209
Alignment:
Q  336 gcggggcacgggtcatataaattgtagaaactaaaaataatatagaaatttgtataagtcttcatagcagtaagtcattagtacggtgataaagatagtg 435  Q
    |||| |||||||||||||| |||||||||||  | ||||||||||||||||||||||| |||||||||| ||||||||||||| ||| ||||||||||||    
T  52938344 gcggcgcacgggtcatatagattgtagaaaccgacaataatatagaaatttgtataagccttcatagcaataagtcattagtatggtaataaagatagtg 52938245  T
Q  436 tattacatcattcatacaaataaaaaagactataaat 472  Q
    |||||||||||||||||||||| ||||||||||||||    
T  52938244 tattacatcattcatacaaata-aaaagactataaat 52938209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 341 - 474
Target Start/End: Complemental strand, 44513354 - 44513221
Alignment:
Q  341 gcacgggtcatataaattgtagaaactaaaaataatatagaaatttgtataagtcttcatagcagtaagtcattagtacggtgataaagatagtgtatta 440  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||| ||| | ||| ||||||||||||| ||||||||||| |||||    
T  44513354 gcacgggtcatatagattgtagaaactaacaataatatagaaatttgtatatgtcttcgtagaaataaatcattagtacggtaataaagatagtttatta 44513255  T
Q  441 catcattcatacaaataaaaaagactataaatct 474  Q
    |||||||  || |||||||||||| |||||||||    
T  44513254 catcattggtataaataaaaaagagtataaatct 44513221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 295
Target Start/End: Complemental strand, 25223363 - 25223242
Alignment:
Q  175 aagtcagattagatcaaaggatgagatgaatgcctagccagatgatttgatccaacggacctccttgattggcgcctaaaaattctaggttta-ggtttt 273  Q
    |||||| || ||||||||||||||||||||||| |||| || | |||||||| |||||  |||||| ||||||||| ||||   |||| |||| ||||||    
T  25223363 aagtcaaatgagatcaaaggatgagatgaatgcttagctagctcatttgatcaaacggctctccttaattggcgcccaaaatggctagctttagggtttt 25223264  T
Q  274 gcaaagttattagcaatgttaa 295  Q
    |||| || ||||||| ||||||    
T  25223263 gcaaggtaattagcattgttaa 25223242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 7e-42; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 68 - 295
Target Start/End: Original strand, 22004336 - 22004554
Alignment:
Q  68 aagcttgggaaacaataacaatatttaatgcaatcatgaaaggtggaaagccataactaaaagcatttaaggtatcagactatcaggtatggggaaatga 167  Q
    ||||||||||||||||||||| |||||||| | |||||||   |||||||||||||| || |||||| | |         ||||||| ||||||||||||    
T  22004336 aagcttgggaaacaataacaacatttaatgtactcatgaacattggaaagccataaccaagagcattaacg---------tatcaggcatggggaaatga 22004426  T
Q  168 aagtttgaagtcagattagatcaaaggatgagatgaatgcctagccagatgatttgatccaacggacctccttgattggcgcctaaaaattctaggttta 267  Q
    || |||||||| | ||||||||||||||||| ||||||||  ||||| |||||  ||||||||||||| ||||||||||||||||||   ||||||||||    
T  22004427 aactttgaagtgacattagatcaaaggatgatatgaatgctgagccaaatgatgagatccaacggaccaccttgattggcgcctaaactatctaggttta 22004526  T
Q  268 ggttttgcaaagttattagcaatgttaa 295  Q
    || |||||||| | ||||||||||||||    
T  22004527 gggtttgcaaaatcattagcaatgttaa 22004554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 175 - 295
Target Start/End: Original strand, 30463028 - 30463149
Alignment:
Q  175 aagtcagattagatcaaaggatgagatgaatgcctagccagatgatttgatccaacggacctccttgattggcgcctaaaaattctaggttta-ggtttt 273  Q
    |||||| || ||||||||||||||||||||||| |||| || | |||||||| |||||  |||||| ||||||||| ||||   ||||||||| ||||||    
T  30463028 aagtcaaatgagatcaaaggatgagatgaatgcttagctagctcatttgatcaaacggctctccttaattggcgcccaaaatggctaggtttagggtttt 30463127  T
Q  274 gcaaagttattagcaatgttaa 295  Q
    |||| || ||||||| ||||||    
T  30463128 gcaaggtaattagcattgttaa 30463149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 165 - 295
Target Start/End: Original strand, 22009496 - 22009626
Alignment:
Q  165 tgaaagtttgaagtcagattagatcaaaggatgagatgaatgcctagccagatgatttgatccaacggacctccttg-attggcgcctaaaaattctagg 263  Q
    |||||||||||  ||||||||||||||||||||||||| |||| |||||| |||||  |||||||||| |  |||||  |||| ||| |||   | ||||    
T  22009496 tgaaagtttgac-tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttagg 22009594  T
Q  264 tttaggttttgcaaagttattagcaatgttaa 295  Q
    |||||| |||||||| | ||||||||||||||    
T  22009595 tttagggtttgcaaattcattagcaatgttaa 22009626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 232
Target Start/End: Complemental strand, 9043943 - 9043889
Alignment:
Q  178 tcagattagatcaaaggatgagatgaatgcctagccagatgatttgatccaacgg 232  Q
    ||||||||||||||||||||||||| |||| |||||| |||||  ||||||||||    
T  9043943 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacgg 9043889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 232
Target Start/End: Original strand, 30442527 - 30442581
Alignment:
Q  178 tcagattagatcaaaggatgagatgaatgcctagccagatgatttgatccaacgg 232  Q
    ||||||||||||||||||||||||| |||| |||||| |||||  ||||||||||    
T  30442527 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacgg 30442581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 178 - 232
Target Start/End: Original strand, 7473469 - 7473523
Alignment:
Q  178 tcagattagatcaaaggatgagatgaatgcctagccagatgatttgatccaacgg 232  Q
    ||||||||||||||||||||||||| |||| |||| | |||||  ||||||||||    
T  7473469 tcagattagatcaaaggatgagatgcatgcttagctaaatgatgagatccaacgg 7473523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 2e-36; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 165 - 295
Target Start/End: Complemental strand, 24454668 - 24454538
Alignment:
Q  165 tgaaagtttgaagtcagattagatcaaaggatgagatgaatgcctagccagatgatttgatccaacggacctccttgattggcgcctaaaaattctaggt 264  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||| |||||  |||||||||| |||||||| |||||||||||||| | |||||    
T  24454668 tgaaagtttgaagtcagattagatcaaaggatgagatgaatgtcaagccaaatgatgagatccaacggccctccttgtttggcgcctaaaaaatttaggt 24454569  T
Q  265 ttaggttttgcaaagttattagcaatgttaa 295  Q
    ||||| ||||||| | | |||||||||||||    
T  24454568 ttaggatttgcaatggtcttagcaatgttaa 24454538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 341 - 465
Target Start/End: Complemental strand, 27534982 - 27534858
Alignment:
Q  341 gcacgggtcatataaattgtagaaactaaaaataatatagaaatttgtataagtcttcatagcagtaagtcattagtacggtgataaagatagtgtatta 440  Q
    |||||||||||||| |||||| ||||| | |||||||| |||||  ||| || ||||||||||| ||||||||||||||  | |||||||||||| ||||    
T  27534982 gcacgggtcatatagattgtacaaactgacaataatatcgaaatcagtagaaatcttcatagcaataagtcattagtacaataataaagatagtgcatta 27534883  T
Q  441 catcattcatacaaataaaaaagac 465  Q
    |||||||||||||||||||||||||    
T  27534882 catcattcatacaaataaaaaagac 27534858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 180 - 256
Target Start/End: Complemental strand, 997958 - 997882
Alignment:
Q  180 agattagatcaaaggatgagatgaatgcctagccagatgatttgatccaacggacctccttgattggcgcctaaaaa 256  Q
    ||||||||| |||||||||||||||||| ||| |||||||||||||| ||||| | ||||| |||||||||||||||    
T  997958 agattagatgaaaggatgagatgaatgcttagtcagatgatttgatcaaacggccatccttaattggcgcctaaaaa 997882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 426 - 474
Target Start/End: Complemental strand, 27534821 - 27534772
Alignment:
Q  426 aaagatagtgtattacatcattcatacaaataa-aaaagactataaatct 474  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  27534821 aaagatagtatattacatcattcatacaaataaaaaaagactataaatct 27534772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 232
Target Start/End: Complemental strand, 12741829 - 12741775
Alignment:
Q  178 tcagattagatcaaaggatgagatgaatgcctagccagatgatttgatccaacgg 232  Q
    ||||||||||||||||||||||||| |||| |||||| |||||  ||||||||||    
T  12741829 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacgg 12741775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 232
Target Start/End: Original strand, 23348960 - 23349014
Alignment:
Q  178 tcagattagatcaaaggatgagatgaatgcctagccagatgatttgatccaacgg 232  Q
    ||||||||||||||||||||||||| |||| |||||| |||||  ||||||||||    
T  23348960 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacgg 23349014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 165 - 231
Target Start/End: Original strand, 1615883 - 1615948
Alignment:
Q  165 tgaaagtttgaagtcagattagatcaaaggatgagatgaatgcctagccagatgatttgatccaacg 231  Q
    |||||||||||  ||| ||||||||||||||||||||| |||| |||||| |||||  |||||||||    
T  1615883 tgaaagtttgac-tcaaattagatcaaaggatgagatgcatgcttagccaaatgatgcgatccaacg 1615948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 231
Target Start/End: Original strand, 18355293 - 18355346
Alignment:
Q  178 tcagattagatcaaaggatgagatgaatgcctagccagatgatttgatccaacg 231  Q
    ||||||||||| ||||||||||||| |||| |||||| |||||  |||||||||    
T  18355293 tcagattagattaaaggatgagatgcatgcttagccaaatgatgagatccaacg 18355346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 71; Significance: 9e-32; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 72 - 295
Target Start/End: Complemental strand, 27650 - 27433
Alignment:
Q  72 ttgggaaacaataacaatatttaatgcaatcatgaaaggtggaaagccataactaaaa---gcatttaaggtatcagactatcaggtatggggaaatgaa 168  Q
    |||| |||||| |||||||||||||| | ||||||||||||||||||||||||||| |   ||||||||     ||   ||||||| ||||| |||||||    
T  27650 ttggaaaacaacaacaatatttaatgtagtcatgaaaggtggaaagccataactaagacgagcatttaa-----ca---tatcaggcatggg-aaatgaa 27560  T
Q  169 agtttgaagtcagattagatcaaaggatgagatgaatgcctagccagatgatttgatccaacggacctccttgattggcgcctaaaaattctaggtttag 268  Q
    |||||||||||| ||||||||||||||||||||| |||| |||||| |||||  |||||||||| |  ||||| |||| ||| |||   | |||||||||    
T  27559 agtttgaagtcaaattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgtttggagccaaaaccatttaggtttag 27460  T
Q  269 gttttgcaaagttattagcaatgttaa 295  Q
    | |||||||| | ||||||||||||||    
T  27459 ggtttgcaaaatcattagcaatgttaa 27433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 1e-27; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 341 - 460
Target Start/End: Complemental strand, 2440083 - 2439964
Alignment:
Q  341 gcacgggtcatataaattgtagaaactaaaaataatatagaaatttgtataagtcttcatagcagtaagtcattagtacggtgataaagatagtgtatta 440  Q
    |||||||||||||| |||||||||||  | |||| ||||||||| |||||||||||||||| || ||||||||||||||| | |||||||||||||||||    
T  2440083 gcacgggtcatatagattgtagaaaccgacaatattatagaaatatgtataagtcttcataacaataagtcattagtacgataataaagatagtgtatta 2439984  T
Q  441 catcattcatacaaataaaa 460  Q
    ||| ||  | ||||||||||    
T  2439983 cattatataaacaaataaaa 2439964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 165 - 295
Target Start/End: Complemental strand, 1262241 - 1262111
Alignment:
Q  165 tgaaagtttgaagtcagattagatcaaaggatgagatgaatgcctagccagatgatttgatccaacggacctccttg-attggcgcctaaaaattctagg 263  Q
    |||||||||||  ||||||||||||||||||||||||| |||| |||||| |||||  ||||||||||    |||||  |||| ||| |||   | ||||    
T  1262241 tgaaagtttgac-tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcttcccttgttttggagccaaaaccatttagg 1262143  T
Q  264 tttaggttttgcaaagttattagcaatgttaa 295  Q
    |||||| |||||||||| ||||||||||||||    
T  1262142 tttagggtttgcaaagtcattagcaatgttaa 1262111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 165 - 295
Target Start/End: Original strand, 26909949 - 26910079
Alignment:
Q  165 tgaaagtttgaagtcagattagatcaaaggatgagatgaatgcctagccagatgatttgatccaacggacctccttg-attggcgcctaaaaattctagg 263  Q
    |||||||||||  ||||||||||||||||||||||||| |||| |||||| |||||  ||||||| || |  |||||  |||| ||| ||    | ||||    
T  26909949 tgaaagtttgac-tcagattagatcaaaggatgagatgcatgcttagccaaatgataagatccaatggtctcccttgttttggagccaaatccatttagg 26910047  T
Q  264 tttaggttttgcaaagttattagcaatgttaa 295  Q
    |||||| |||||||||||||||||||||||||    
T  26910048 tttagggtttgcaaagttattagcaatgttaa 26910079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 232
Target Start/End: Original strand, 43071362 - 43071416
Alignment:
Q  178 tcagattagatcaaaggatgagatgaatgcctagccagatgatttgatccaacgg 232  Q
    ||||||||||||||||||||||||| |||| |||||| |||||  ||||||||||    
T  43071362 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacgg 43071416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 230
Target Start/End: Original strand, 48849775 - 48849839
Alignment:
Q  165 tgaaagtttgaagtcagattagatcaaaggatgagatgaatgcctagccagatgatttgatccaac 230  Q
    |||||||||||  ||||||||||||||||||||||||| |||| |||||| |||||  ||||||||    
T  48849775 tgaaagtttgac-tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaac 48849839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 295
Target Start/End: Original strand, 33045399 - 33045529
Alignment:
Q  165 tgaaagtttgaagtcagattagatcaaaggatgagatgaatgcctagccagatgatttgatccaacggacctccttga--ttggcgcctaaaaattctag 262  Q
    |||||||||||  ||||||||||||||||||||||||| |||| || ||| |||||  |||||||||| ||||| | |  |||| ||| |||   | |||    
T  33045399 tgaaagtttgac-tcagattagatcaaaggatgagatgcatgcttaaccaaatgatgagatccaacgg-cctcccttattttggagccaaaaccatttag 33045496  T
Q  263 gtttaggttttgcaaagttattagcaatgttaa 295  Q
    ||||||| |||||||||| ||||||||||||||    
T  33045497 gtttagggtttgcaaagtcattagcaatgttaa 33045529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 202
Target Start/End: Complemental strand, 8976567 - 8976521
Alignment:
Q  156 atggggaaatgaaagtttgaagtcagattagatcaaaggatgagatg 202  Q
    |||||||||||||||| ||   |||||||||||||||||||||||||    
T  8976567 atggggaaatgaaagtctgcgatcagattagatcaaaggatgagatg 8976521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 295
Target Start/End: Complemental strand, 35216 - 35086
Alignment:
Q  165 tgaaagtttgaagtcagattagatcaaaggatgagatgaatgcctagccagatgatttgatccaacggacct-ccttg-attggcgcctaaaaattctag 262  Q
    |||||||||||  ||||||||||||||||||||||||| |||| |||||| |||||  ||||||||  |||| |||||  |||| ||| |||   | |||    
T  35216 tgaaagtttgac-tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaac-aacctcccttgttttggagccaaaaccatttag 35119  T
Q  263 gtttaggttttgcaaagttattagcaatgttaa 295  Q
    ||||||| |||||||||| ||||||||||||||    
T  35118 gtttagggtttgcaaagtcattagcaatgttaa 35086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0596 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 232
Target Start/End: Complemental strand, 795 - 741
Alignment:
Q  178 tcagattagatcaaaggatgagatgaatgcctagccagatgatttgatccaacgg 232  Q
    ||||||||||||||||||||||||| |||| |||||| |||||  ||||||||||    
T  795 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacgg 741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 232
Target Start/End: Original strand, 29863329 - 29863395
Alignment:
Q  165 tgaaagtttgaagtcagattagatcaaaggatgagatgaatgcctagccagatgatttgatccaacgg 232  Q
    |||||||||||  ||||||||||||||||||||||||| ||||  ||||| |||||  ||||||||||    
T  29863329 tgaaagtttgac-tcagattagatcaaaggatgagatgcatgctcagccaaatgatgagatccaacgg 29863395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 243 - 288
Target Start/End: Complemental strand, 38014415 - 38014371
Alignment:
Q  243 ttggcgcctaaaaattctaggtttaggttttgcaaagttattagca 288  Q
    ||||||||||||||| |||||||||||||||| ||||| |||||||    
T  38014415 ttggcgcctaaaaat-ctaggtttaggttttgtaaagtcattagca 38014371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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