View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11942_high_44 (Length: 242)
Name: NF11942_high_44
Description: NF11942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11942_high_44 |
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Alignment Details
Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 42 - 224
Target Start/End: Complemental strand, 15076567 - 15076385
Alignment:
| Q |
42 |
ttaatgctccaaggaccaaaccgctgctactctaacccaaaacaaaaaacagaccacactcttacacggaacatagagcactacgaactctttataccaa |
141 |
Q |
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|||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
15076567 |
ttaaggctccaaggaccaaaccgctgctactctaatccataacaaaaaacagaccacactcttacacggaacacagagcactacgaactctttataccaa |
15076468 |
T |
|
| Q |
142 |
acctcccgaaacaaaaaatacacatacatgcacaacaagtgcagcagaaacccacatctctctacacttcccaccctagcaca |
224 |
Q |
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||| |||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
15076467 |
accacccgaaacaaaaaacacacatacatgcacgacaagtgcagcagaaatccacatctctctatacttcccaccctagcaca |
15076385 |
T |
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