View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11942_high_52 (Length: 228)
Name: NF11942_high_52
Description: NF11942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11942_high_52 |
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Alignment Details
Target: chr6 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 19 - 221
Target Start/End: Complemental strand, 14828038 - 14827836
Alignment:
| Q |
19 |
tagttttcaattaaaatgtgttgttgaaacaaccacagcctagtagagtagaaatagaaacaccaacgatgttggaggtcaaaatttccgccaaggaata |
118 |
Q |
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| T |
14828038 |
tagttttcaattaaaatgtgttgttgaaacaaccacagcctagtagagtagaaatagaaaaaccaacaatgttggaggtcaaaattgcagccaaggaata |
14827939 |
T |
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| Q |
119 |
gttgattaagcttttccacacttatgatcctgaatggatcacatctcaagataatcaaaaacttgttcttcaacaagaaaactatgaagaagtgttccct |
218 |
Q |
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| T |
14827938 |
gttgattaagattttctgcacttatgatcctgaatgggtcacatctcaagataatcaaaaacttattcttcaacaagaaaactatgaagaagtgttccct |
14827839 |
T |
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| Q |
219 |
atg |
221 |
Q |
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||| |
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| T |
14827838 |
atg |
14827836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 60 - 219
Target Start/End: Original strand, 14827263 - 14827420
Alignment:
| Q |
60 |
agtagagtagaaatagaaacaccaacgatgttggaggtcaaaatttccgccaaggaatagttgattaagcttttccacacttatgatcctgaatggatca |
159 |
Q |
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||||||||| ||| ||||| ||||| ||||||||||||||| || | ||||||||| ||||| ||| | |||||| ||| |||| ||| |||| ||| |
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| T |
14827263 |
agtagagtataaacagaaataccaatgatgttggaggtcaa--ttactgccaaggaagagttgcttatgtttttccgcaccaatgagcctttatgggtca |
14827360 |
T |
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| Q |
160 |
catctcaagataatcaaaaacttgttcttcaacaagaaaactatgaagaagtgttcccta |
219 |
Q |
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| T |
14827361 |
tttatcaagttaatcaaaatcttattcttcaaccagaaaactatgaagatgtcttcccta |
14827420 |
T |
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