View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11942_high_8 (Length: 545)
Name: NF11942_high_8
Description: NF11942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11942_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 17 - 299
Target Start/End: Complemental strand, 46549916 - 46549634
Alignment:
| Q |
17 |
caccctccatagcaaaatatttattacctacttgctgtaacacataaacttcatcccttatgatctcaacttagcaccactcccaataaccagaccaata |
116 |
Q |
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| T |
46549916 |
cacccaccatagcaaaatatttattacctacttgctgtaacacctaaacatcatcccttatgatctcaacttagcaccactcccaataaccagaccaata |
46549817 |
T |
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| Q |
117 |
gaagtttcataatttaaccagcctccactacatctaagtgtttgaacttgtagtatattaacttgagaaattacatgagtttaattacacttttaattac |
216 |
Q |
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| T |
46549816 |
gaagtttcataatttaaccagcctccactacatctaagtgtttgaacttgtagtatattaacttgagaaattacatgagtttaattacacttttaattac |
46549717 |
T |
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| Q |
217 |
ccatcttgtctcgaatgcgagtaacagtaatgcaaagccacttagactctgtttgaaaaaagaaaacaattcgtcaaattctt |
299 |
Q |
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| T |
46549716 |
ccatcttgtctcgaatgcgagtaacaataatgcaaagccacttagactctgtttgaaaaaagaaaacaattcgtcaaattctt |
46549634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 354 - 536
Target Start/End: Complemental strand, 46549582 - 46549400
Alignment:
| Q |
354 |
aaatttggtgtagttatagtcactccaaactttatagtagatcaatcctgcacatcattcattgnnnnnnnnnnnnnnnnnggcttgtgataactataaa |
453 |
Q |
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| T |
46549582 |
aaatttggtgtagttatagtcactccaaactttatagtagatcaatcctgcacatcattcattgttttttattttacttttggcttgtgataactataaa |
46549483 |
T |
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| Q |
454 |
catttattttatggatcccaaaatcccacatttcaccatatgcaaaaactttaatgggtcactctctaaaacattgacctatg |
536 |
Q |
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| T |
46549482 |
catttattttatggatcccaaaatcccacatttcaccatatgcaaaaactttaatgggtcactctctaaaacattgacctatg |
46549400 |
T |
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