View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11942_low_1 (Length: 1067)
Name: NF11942_low_1
Description: NF11942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11942_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 872; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 872; E-Value: 0
Query Start/End: Original strand, 1 - 920
Target Start/End: Complemental strand, 38752908 - 38751989
Alignment:
| Q |
1 |
caaataactaattaatagactcattggatcttattatagtttatcctacaaaaactcattgtttgtactgacatggtcatatgcttcttaaagttagtaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38752908 |
caaataactaattaatagactcattggatcttattatagtttatcctacaaaaactcattgtttgtactgacatggtcatatgcttcttaaagttagtaa |
38752809 |
T |
|
| Q |
101 |
actatttagatagccaaaagaagagttacttaaatgatatgtcatatatttttgtttcatagagtaaaattataatgtgaaaatgttgggtatgactcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38752808 |
actatttagatagccaaaagaagagttacttaaatgatatgtcatatatttttgtttcatagagtaaaattataatgtgaaaatgttgggtatgactcat |
38752709 |
T |
|
| Q |
201 |
agtttaccggtaaatagataagtttattgatcagagataatcttataaattggactgtagtatttaaacataagttgtctactgatcagatataatcatg |
300 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
38752708 |
agtttaccggtaaatagacaagtttattgatcagagataatcttgtaaattggactgtagtatttaaacacaagttgtctactgatcagatataatcatg |
38752609 |
T |
|
| Q |
301 |
taaattggaccgtagtatttaaacaaaatttgtaatatatatgcaatcctaaatttgattaatggaaaaatattacaaccactttatagtcggatacgta |
400 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| |
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| T |
38752608 |
taaattggaccgtagtatttaaataaaatttgtaatatatatgcaatccgaaatttgactaatggaaaaatattacaaccactttgtagtcggatacgta |
38752509 |
T |
|
| Q |
401 |
ggcacaattggctgaactctctaatcaaacctagtgtattctttgtgaataagaggtgttgctctaatagaaagagagtgatagaggttattttaaactc |
500 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
38752508 |
ggcacaattggccgaactctctaatcaaacctagtgtattcattgtgaataagaggtgttgctctaatagaaagagagtgagagaggttattttaaactt |
38752409 |
T |
|
| Q |
501 |
ggtggtgcattagtgaatgagtaagagaatactataacataacaaagcataaaattagataagtagcacaaaagtctttggtttagtgtgatggctttca |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38752408 |
ggtggtgcattagtgaatgagtaagagaatactataacataacaaagcataaaattagataagtagcacaaaagtctttggtttagtgtgatggctttca |
38752309 |
T |
|
| Q |
601 |
cattagagaggtgtgaagataacatggtgttcactatggagtctcagaaatcagtgcctgctcctttcttgacaaagacataccaacttgttgatgatcc |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38752308 |
cattagagaggtgtgaagataacatggtgttcactatggagtctcagaaatcagtgcctgctcctttcttgacaaagacataccaacttgttgatgatcc |
38752209 |
T |
|
| Q |
701 |
tctcactgaccacattgtatcttggagtgatgatgaaactacatttgttgtttggaggcctcctgagtttgctagagatcttcttcccaattttttcaag |
800 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38752208 |
tctcactgaccacattgtatcttggagtgatgatgaaactacatttgttgtttggaggcctcctgagtttgctagagatcttcttcccaattttttcaag |
38752109 |
T |
|
| Q |
801 |
cataacaacttctcaagctttgttaggcaactaaatacatatgtgagaatcttcaaattctaacttctatgttctctatatccttattcattgttttagt |
900 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
38752108 |
cataacaacttctcaagctttgttaggcaactaaatacatatgtgagaatcttcaaattctaacttctatgttctatatatccttattcattgttttagt |
38752009 |
T |
|
| Q |
901 |
aagtatcttctttagttagt |
920 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
38752008 |
aagtatcttctttagttagt |
38751989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 944 - 1052
Target Start/End: Complemental strand, 38751924 - 38751816
Alignment:
| Q |
944 |
ttctataagctcttcaaaacagtttcgcaagctatgaagcactgacaataatttgagaaaatgtaacaacagaatacagtcacatgtatcgatgttgtgt |
1043 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
38751924 |
ttctataagcttttcaaaacagtttcgcaagctatgaagcactgacaataatttgagaaaatgtaacaacggaatacagtcacatgtatcgatgttgtgt |
38751825 |
T |
|
| Q |
1044 |
tggtgtctg |
1052 |
Q |
| |
|
||||||||| |
|
|
| T |
38751824 |
tggtgtctg |
38751816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 301 - 338
Target Start/End: Complemental strand, 10842682 - 10842645
Alignment:
| Q |
301 |
taaattggaccgtagtatttaaacaaaatttgtaatat |
338 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||| |
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|
| T |
10842682 |
taaattggaccgtagtatttaaacacaaattgtaatat |
10842645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 771 - 820
Target Start/End: Complemental strand, 12478780 - 12478731
Alignment:
| Q |
771 |
gctagagatcttcttcccaattttttcaagcataacaacttctcaagctt |
820 |
Q |
| |
|
|||||||| ||||| || || ||||||||||||||||| ||||||||||| |
|
|
| T |
12478780 |
gctagagaccttctgccgaagtttttcaagcataacaatttctcaagctt |
12478731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 6e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 6e-37
Query Start/End: Original strand, 937 - 1052
Target Start/End: Original strand, 3020507 - 3020622
Alignment:
| Q |
937 |
aagttatttctataagctcttcaaaacagtttcgcaagctatgaagcactgacaataatttgagaaaatgtaacaacagaatacagtcacatgtatcgat |
1036 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||| | ||||| ||||||||||||| || |
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|
| T |
3020507 |
aagttatttatataagctcttcaaaacagtttcgcaagctatgaagcactcataataatttgagaaaatggaacagcggaataaagtcacatgtatcaat |
3020606 |
T |
|
| Q |
1037 |
gttgtgttggtgtctg |
1052 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
3020607 |
gtcgtgttggtgtctg |
3020622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 293 - 338
Target Start/End: Complemental strand, 37410071 - 37410026
Alignment:
| Q |
293 |
taatcatgtaaattggaccgtagtatttaaacaaaatttgtaatat |
338 |
Q |
| |
|
||||| ||||||||||||||||||||||||| | || ||||||||| |
|
|
| T |
37410071 |
taatcttgtaaattggaccgtagtatttaaaaacaaattgtaatat |
37410026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 648 - 820
Target Start/End: Complemental strand, 46927245 - 46927073
Alignment:
| Q |
648 |
aaatcagtgcctgctcctttcttgacaaagacataccaacttgttgatgatcctctcactgaccacattgtatcttggagtgatgatgaaactacatttg |
747 |
Q |
| |
|
|||||||| || ||||| ||| | || || ||||||||||||||||||||||| ||| || ||||| || |||||| |||| ||||| | || || | |
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|
| T |
46927245 |
aaatcagtcccagctccattcctcaccaaaacataccaacttgttgatgatccagccacagatcacatcgtttcttggggtgaagatgactccaccttcg |
46927146 |
T |
|
| Q |
748 |
ttgtttggaggcctcctgagtttgctagagatcttcttcccaattttttcaagcataacaacttctcaagctt |
820 |
Q |
| |
|
|||||||| | |||||||| ||||||||||| || || || || | ||||| || ||||||||||| ||||| |
|
|
| T |
46927145 |
ttgtttggcgtcctcctgaatttgctagagacctcctccctaactacttcaaacacaacaacttctctagctt |
46927073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 973 - 1006
Target Start/End: Original strand, 31815642 - 31815675
Alignment:
| Q |
973 |
agctatgaagcactgacaataatttgagaaaatg |
1006 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
|
|
| T |
31815642 |
agctatgaagcactgataataatttgagaaaatg |
31815675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 335
Target Start/End: Complemental strand, 34655396 - 34655354
Alignment:
| Q |
293 |
taatcatgtaaattggaccgtagtatttaaacaaaatttgtaa |
335 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
34655396 |
taatcatgtaaattggaccgtagcatttaaagtaaatttgtaa |
34655354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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