View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11942_low_11 (Length: 513)
Name: NF11942_low_11
Description: NF11942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11942_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 226 - 497
Target Start/End: Original strand, 36881733 - 36882004
Alignment:
| Q |
226 |
gctgtattggtagtgttttccaccacttaacaaacgtagaaccctccaaaaacacatccttaccaacctcaccattctcatcccacttgcttataaatcc |
325 |
Q |
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| T |
36881733 |
gctgtattggtagtgttttccaccacttaacaaacgtagaaccctccaaaaacacatccttaccaacctcaccattctcatcccacttgcttataaatcc |
36881832 |
T |
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| Q |
326 |
ctccaaggcctcaactttttcctgaacatcttcaaaagagctctcagtatcatgagaaagatcttccacctcagcccaaaaacatgactctgagtaacca |
425 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36881833 |
ctccaaggcctcaactttttcctgaacatcttcaaaagagctctcagtatcatgagaaagatcttccacctcagcccaaaaacatgactctgagtaacca |
36881932 |
T |
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| Q |
426 |
ccttctcccctcttctcagcatgttccaaccatctttgtgtatacctatacctttttggttttcctccttta |
497 |
Q |
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| T |
36881933 |
ccttctcccctcttctcagcatgttccaaccatctttgtgtatacctatacctttttggttttcctccttta |
36882004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 124 - 497
Target Start/End: Complemental strand, 35448085 - 35447709
Alignment:
| Q |
124 |
caaagtactatattggtataatttataactgaaccaata---cagaagataaacagcacctgtgtcacacttcaacaagccttttaatgcatgattgttc |
220 |
Q |
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| T |
35448085 |
caaagtactatattagtataatttataactgcactaataatccagaggataagcagcatctgtgtcacacttcaacaagacttctaatgcatgattgttc |
35447986 |
T |
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| Q |
221 |
cctatgctgtattggtagtgttttccaccacttaacaaacgtagaaccctccaaaaacacatccttaccaacctcaccattctcatcccacttgcttata |
320 |
Q |
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| T |
35447985 |
cttatggtgggttggtaatgttttccaccacttaacaaacgtagaatcccccaaaaacacatccttaccaacttcacctttctcatgccacttgcttata |
35447886 |
T |
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| Q |
321 |
aatccctccaaggcctcaactttttcctgaacatcttcaaaagagctctcagtatcatgagaaagatcttccacctcagcccaaaaacatgactctgagt |
420 |
Q |
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|| ||||||||||||||||| ||||||| |||||| ||||||| | |||| ||||||| ||||||| ||||||||||||||||||||||| ||||||| |
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| T |
35447885 |
aacccctccaaggcctcaaccttttccttaacatcatcaaaaggcttgtcaggatcatgacaaagatcctccacctcagcccaaaaacatgattctgagt |
35447786 |
T |
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| Q |
421 |
aaccaccttctcccctcttctcagcatgttccaaccatctttgtgtatacctatacctttttggttttcctccttta |
497 |
Q |
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|||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
35447785 |
aaccgccttcatccctcttctcaaaatgttccaaccatctttgtgtatacctatacctttttggccttccaccttta |
35447709 |
T |
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