View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11942_low_12 (Length: 495)

Name: NF11942_low_12
Description: NF11942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11942_low_12
NF11942_low_12
[»] chr7 (2 HSPs)
chr7 (347-456)||(22648712-22648821)
chr7 (347-457)||(1066905-1067014)
[»] chr4 (2 HSPs)
chr4 (353-457)||(661620-661724)
chr4 (386-490)||(45031192-45031296)
[»] chr2 (3 HSPs)
chr2 (386-457)||(12836554-12836625)
chr2 (18-192)||(12836177-12836357)
chr2 (351-457)||(41148862-41148968)
[»] chr1 (4 HSPs)
chr1 (347-457)||(47794352-47794462)
chr1 (353-455)||(33812220-33812322)
chr1 (353-455)||(33871691-33871793)
chr1 (386-442)||(17961102-17961158)
[»] chr3 (3 HSPs)
chr3 (353-457)||(12040164-12040268)
chr3 (347-446)||(44867240-44867339)
chr3 (387-441)||(404327-404381)
[»] chr5 (1 HSPs)
chr5 (386-457)||(30053494-30053565)


Alignment Details
Target: chr7 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 347 - 456
Target Start/End: Complemental strand, 22648821 - 22648712
Alignment:
Q  347 gaggggagagaaatttgttacaagattttaacnnnnnnngatatgtttaaaacaaactaaaatttcaatcatatccttgttttgctatatatacacaaag 446  Q
    |||| |||||||||||||||| ||||||||||       ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  22648821 gaggagagagaaatttgttacgagattttaacaaaaaaagatatgtttaaaacaaactaaaattccaatcatatccttgttttgctatatatacacaaag 22648722  T
Q  447 gctagtcttc 456  Q
     |||||||||    
T  22648721 actagtcttc 22648712  T

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Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 347 - 457
Target Start/End: Complemental strand, 1067014 - 1066905
Alignment:
Q  347 gaggggagagaaatttgttacaagattttaacnnnnnnngatatgtttaaaacaaactaaaatttcaatcatatccttgttttgctatatatacacaaag 446  Q
    |||| |||||||||||||||| ||||||||||        | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1067014 gaggagagagaaatttgttacgagattttaacaaaaaaaaa-atgtttaaaacaaactaaaattccaatcatatccttgttttgctatatatacacaaag 1066916  T
Q  447 gctagtcttcc 457  Q
     ||||||||||    
T  1066915 actagtcttcc 1066905  T

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Target: chr4 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 353 - 457
Target Start/End: Complemental strand, 661724 - 661620
Alignment:
Q  353 agagaaatttgttacaagattttaacnnnnnnngatatgtttaaaacaaactaaaatttcaatcatatccttgttttgctatatatacacaaaggctagt 452  Q
    ||||||||||||||  ||||||||||       ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  661724 agagaaatttgttatgagattttaacaaaaaaagatatgtttaaaacaaactaaaattccaatcatatccttgttttgctatatatacacaaagactagt 661625  T
Q  453 cttcc 457  Q
    |||||    
T  661624 cttcc 661620  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 386 - 490
Target Start/End: Original strand, 45031192 - 45031296
Alignment:
Q  386 gatatgtttaaaacaaactaaaatttcaatcatatccttgttttgctatatatacacaaaggctagtcttccnnnnnnnagaggctattcattattcttc 485  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||| |||| ||||||||||       |||| |||||| |||||||||    
T  45031192 gatatgtttaaaacaaaataaaatttcaatcatatccttattttgttatatatacataaagactagtcttccttttttcagagcctattcgttattcttc 45031291  T
Q  486 tctct 490  Q
    |||||    
T  45031292 tctct 45031296  T

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Target: chr2 (Bit Score: 68; Significance: 4e-30; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 386 - 457
Target Start/End: Original strand, 12836554 - 12836625
Alignment:
Q  386 gatatgtttaaaacaaactaaaatttcaatcatatccttgttttgctatatatacacaaaggctagtcttcc 457  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  12836554 gatatgtttaaaacaaactaaaattccaatcatatccttgttttgctatatatacacaaaggctagtcttcc 12836625  T

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Target: chr2; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 12836177 - 12836357
Alignment:
Q  18 gatatcatcttgatttccaaggttctgtattccatgatcgattgatccatcgtcnnnnnnnnnnnnntag------gggttgtgtgttgttgttctaggg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||              ||      ||||| |||||||||| ||||||     
T  12836177 gatatcatcttgatttccaaggttctgtattccatgatcgattgatccatcgtcagagagagagagagagagattggggttatgtgttgttggtctagg- 12836275  T
Q  112 attagggttttgatgactgtgttttgtggatttgttattatacac--gtattgttggaaggattaaataagggcccgtttgtt 192  Q
    ||||||||||||||||||||||| |||||||| || |||||||||  ||||||||||||||||||||||| || |||||||||    
T  12836276 attagggttttgatgactgtgttatgtggatt-gtgattatacacacgtattgttggaaggattaaataatggtccgtttgtt 12836357  T

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Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 351 - 457
Target Start/End: Complemental strand, 41148968 - 41148862
Alignment:
Q  351 ggagagaaatttgttacaagattttaacnnnnnnngatatgtttaaaacaaactaaaatttcaatcatatccttgttttgctatatatacacaaaggcta 450  Q
    |||| |||||||||||| |||||||||        ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||    
T  41148968 ggagggaaatttgttacgagattttaataaaaaaagatatgtttaaaacaaactaaaattccaatcatatccttgttttgctatatatacacaaagacta 41148869  T
Q  451 gtcttcc 457  Q
     ||||||    
T  41148868 atcttcc 41148862  T

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Target: chr1 (Bit Score: 66; Significance: 6e-29; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 347 - 457
Target Start/End: Complemental strand, 47794462 - 47794352
Alignment:
Q  347 gaggggagagaaatttgttacaagattttaacnnnnnnngatatgtttaaaacaaactaaaatttcaatcatatccttgttttgctatatatacacaaag 446  Q
    |||| |||||||||||||||| ||||||||||       |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  47794462 gaggagagagaaatttgttacgagattttaacaaaaaaggatatgttcaaaacaaactaaaattccaatcatatccttgttttgctatatatacacaaag 47794363  T
Q  447 gctagtcttcc 457  Q
     ||| ||||||    
T  47794362 actaatcttcc 47794352  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 353 - 455
Target Start/End: Original strand, 33812220 - 33812322
Alignment:
Q  353 agagaaatttgttacaagattttaacnnnnnnngatatgtttaaaacaaactaaaatttcaatcatatccttgttttgctatatatacacaaaggctagt 452  Q
    ||||||||||||||| ||||||||||        ||||||||| |||||||||||||| |||||||||||||||||||||||||||||| || | |||||    
T  33812220 agagaaatttgttacgagattttaacataaaaatatatgtttataacaaactaaaattccaatcatatccttgttttgctatatatacataatgactagt 33812319  T
Q  453 ctt 455  Q
    |||    
T  33812320 ctt 33812322  T

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Target: chr1; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 353 - 455
Target Start/End: Original strand, 33871691 - 33871793
Alignment:
Q  353 agagaaatttgttacaagattttaacnnnnnnngatatgtttaaaacaaactaaaatttcaatcatatccttgttttgctatatatacacaaaggctagt 452  Q
    ||||||||||||||| ||||||||||        ||||||||| |||||||||||||| |||||||||||||||||||||||||||||| || | |||||    
T  33871691 agagaaatttgttacgagattttaacataaaaatatatgtttataacaaactaaaattccaatcatatccttgttttgctatatatacataatgactagt 33871790  T
Q  453 ctt 455  Q
    |||    
T  33871791 ctt 33871793  T

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Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 386 - 442
Target Start/End: Original strand, 17961102 - 17961158
Alignment:
Q  386 gatatgtttaaaacaaactaaaatttcaatcatatccttgttttgctatatatacac 442  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  17961102 gatatgtttaaaacaaactaaaattccaatcatatccttgttttgctatatatacac 17961158  T

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Target: chr3 (Bit Score: 64; Significance: 9e-28; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 353 - 457
Target Start/End: Original strand, 12040164 - 12040268
Alignment:
Q  353 agagaaatttgttacaagattttaacnnnnnnngatatgtttaaaacaaactaaaatttcaatcatatccttgttttgctatatatacacaaaggctagt 452  Q
    ||||||||||||||  ||||||||||       ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||    
T  12040164 agagaaatttgttaggagattttaacaaaaaaagatatgtttaaaacaaactaaaattccaatcatatccttgttttgctatatatacataaagactagt 12040263  T
Q  453 cttcc 457  Q
    |||||    
T  12040264 cttcc 12040268  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 347 - 446
Target Start/End: Original strand, 44867240 - 44867339
Alignment:
Q  347 gaggggagagaaatttgttacaagattttaacnnnnnnngatatgtttaaaacaaactaaaatttcaatcatatccttgttttgctatatatacacaaag 446  Q
    |||| ||||||||||| |||||||||||||||        |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  44867240 gaggagagagaaatttattacaagattttaacaaaaaaatatatgtttaaaacaaattaaaattccaatcatatccttgttttgctatatatacacaaag 44867339  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 387 - 441
Target Start/End: Original strand, 404327 - 404381
Alignment:
Q  387 atatgtttaaaacaaactaaaatttcaatcatatccttgttttgctatatataca 441  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||||||||||    
T  404327 atatgtttaaaacaaactaaaattccaatcatatccttgttttactatatataca 404381  T

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Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 386 - 457
Target Start/End: Original strand, 30053494 - 30053565
Alignment:
Q  386 gatatgtttaaaacaaactaaaatttcaatcatatccttgttttgctatatatacacaaaggctagtcttcc 457  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||    
T  30053494 gatatgtttaaaacaaactaaaattccaatcatatccttgttttgctatatatacgcaaagactagtcttcc 30053565  T

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