View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11942_low_18 (Length: 445)

Name: NF11942_low_18
Description: NF11942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11942_low_18
NF11942_low_18
[»] chr8 (3 HSPs)
chr8 (16-435)||(28439577-28440007)
chr8 (398-434)||(11771718-11771754)
chr8 (393-433)||(40512645-40512685)
[»] chr1 (2 HSPs)
chr1 (386-431)||(30433525-30433570)
chr1 (393-431)||(31060224-31060262)
[»] chr6 (2 HSPs)
chr6 (382-426)||(4250562-4250606)
chr6 (393-433)||(14552343-14552383)
[»] chr5 (1 HSPs)
chr5 (387-434)||(32460011-32460058)
[»] chr4 (1 HSPs)
chr4 (393-426)||(23928467-23928500)
[»] chr2 (1 HSPs)
chr2 (393-434)||(26427804-26427845)
[»] scaffold0045 (1 HSPs)
scaffold0045 (381-433)||(42212-42264)


Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 16 - 435
Target Start/End: Original strand, 28439577 - 28440007
Alignment:
Q  16 atttacacttttaactcatctatgattatgtacttttaaatgtgcatgtgttacagcaaactgagtaagggttaatatatatgatgggcttgataaattg 115  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  28439577 atttacacttttaactcatctatgattatgtacttttatatgtgcatgtgttacagcaaactgagtaagggttagtatatatgatgggcttgataaattg 28439676  T
Q  116 aacaagtctaaaattaactattgattaattagtaacaaaatacaatagtcaagtttactatatttcttgccaatgtacttgactaatagaggccacacat 215  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  28439677 aacaagtccaaaattaacgattgattaattagtaacaaaatacaatagtcaagtttactatatttcttgccaatgtgcttgactaattgaggccacacat 28439776  T
Q  216 aataactcttcacaaatacatttactaatgatcaaatccattaaggaacaattttaaccctcaccaacaaaacaatctc--gtgtctaacctagttctga 313  Q
    ||||||||||||| | |||||||||||||||||||||| |||| ||||||||||||||||||||||||||| | |||||  ||||||||||||||| |||    
T  28439777 aataactcttcacgattacatttactaatgatcaaatctattacggaacaattttaaccctcaccaacaaagcgatctcttgtgtctaacctagttttga 28439876  T
Q  314 acaagctttctgtatataattctacnnnnnnnnnaattgtatagcatagtata---------agtaaatataatacgtcatcgtaaatttaattcagttg 404  Q
    ||| | |||||||||||||||||||         | |||||||||||| ||||         |||| ||||||||||||||||| | |||||||||||||    
T  28439877 acatgttttctgtatataattctactttttttttatttgtatagcataatataagtatatatagtatatataatacgtcatcgtgagtttaattcagttg 28439976  T
Q  405 atagagataatacataatatatacaaggtct 435  Q
    ||| ||||||| ||||||||||  |||||||    
T  28439977 ataaagataatgcataatatatgtaaggtct 28440007  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 398 - 434
Target Start/End: Original strand, 11771718 - 11771754
Alignment:
Q  398 tcagttgatagagataatacataatatatacaaggtc 434  Q
    |||||||||||||| |||||||||||||| |||||||    
T  11771718 tcagttgatagagacaatacataatatatgcaaggtc 11771754  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 393 - 433
Target Start/End: Complemental strand, 40512685 - 40512645
Alignment:
Q  393 ttaattcagttgatagagataatacataatatatacaaggt 433  Q
    |||| ||||||| |||||| |||||||||||||||||||||    
T  40512685 ttaactcagttggtagagacaatacataatatatacaaggt 40512645  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 386 - 431
Target Start/End: Complemental strand, 30433570 - 30433525
Alignment:
Q  386 cgtaaatttaattcagttgatagagataatacataatatatacaag 431  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||    
T  30433570 cgtaagtttaactcagttgatagagataatacataatatatacaag 30433525  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 393 - 431
Target Start/End: Complemental strand, 31060262 - 31060224
Alignment:
Q  393 ttaattcagttgatagagataatacataatatatacaag 431  Q
    ||||||||||||||||||||||| |||||||||| ||||    
T  31060262 ttaattcagttgatagagataatgcataatatatgcaag 31060224  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 382 - 426
Target Start/End: Complemental strand, 4250606 - 4250562
Alignment:
Q  382 tcatcgtaaatttaattcagttgatagagataatacataatatat 426  Q
    ||||||||||||||||||||||| |||  ||||||||||||||||    
T  4250606 tcatcgtaaatttaattcagttgttaggaataatacataatatat 4250562  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 433
Target Start/End: Original strand, 14552343 - 14552383
Alignment:
Q  393 ttaattcagttgatagagataatacataatatatacaaggt 433  Q
    |||| |||||||||||||||||| |||||||||||||||||    
T  14552343 ttaactcagttgatagagataatgcataatatatacaaggt 14552383  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 434
Target Start/End: Original strand, 32460011 - 32460058
Alignment:
Q  387 gtaaatttaattcagttgatagagataatacataatatatacaaggtc 434  Q
    ||||| |||| |||||||||| ||| ||||||||||||||||||||||    
T  32460011 gtaaacttaactcagttgataaagacaatacataatatatacaaggtc 32460058  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 426
Target Start/End: Original strand, 23928467 - 23928500
Alignment:
Q  393 ttaattcagttgatagagataatacataatatat 426  Q
    ||||||||||||||||||| ||||||||||||||    
T  23928467 ttaattcagttgatagagacaatacataatatat 23928500  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 434
Target Start/End: Original strand, 26427804 - 26427845
Alignment:
Q  393 ttaattcagttgatagagataatacataatatatacaaggtc 434  Q
    ||||| |||||||||| ||||||||||||||||| |||||||    
T  26427804 ttaatccagttgatagcgataatacataatatatgcaaggtc 26427845  T

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Target: scaffold0045 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 433
Target Start/End: Original strand, 42212 - 42264
Alignment:
Q  381 gtcatcgtaaatttaattcagttgatagagataatacataatatatacaaggt 433  Q
    |||||||| || |||||| ||||||||||||||||  ||||||||| ||||||    
T  42212 gtcatcgtgaacttaatttagttgatagagataatgtataatatatgcaaggt 42264  T

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