View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11942_low_20 (Length: 417)
Name: NF11942_low_20
Description: NF11942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11942_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 369; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 11 - 399
Target Start/End: Original strand, 32627782 - 32628170
Alignment:
| Q |
11 |
tgagatgaagcatggacccatttcagtccccatttcttcaagtagtttttctttgaaaatgtcaagggacttaaatatggtgttgaagtcatttcccggt |
110 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
32627782 |
tgagaagaagcatggacccatttcagtccccatttcatcaagtagtttttctttgaaaatgtcaagggacgtaaatatggtgttgaagtcatttcccggt |
32627881 |
T |
|
| Q |
111 |
agatcgttcaaaaatatcatatattcgggagatttatgattaagttttcgacaaagcttttccacaactttgataatatctaagatcaccaacaaagtgt |
210 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32627882 |
agatcgttcaaatatatcatatattcgggagatttatgattaagttttcgacaaagcttttccacaactttgataatatctaagatcaccaacaaagtgt |
32627981 |
T |
|
| Q |
211 |
ttgatccagaagagcaacctaagtctgcaattgtcaagcttttggagagtgtgttgttgtacatgctggttatggcttcatctctcaaaggttttgtcaa |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32627982 |
ttgatccagaagagcaacctaagtctgcaattgtcaagcttttggagagtgtgttgttgtacatgctggttatggcttcatctctcaaaggttttgtcaa |
32628081 |
T |
|
| Q |
311 |
atatattacctttcgctgtatacatgcaatcggcacataaaattagaagaaaacaagtacatttttctaattacaactatgagcttctt |
399 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32628082 |
atatattacctttcgctgtatacatgaaatcggcacataaaattagaagaaaacaagtacatttttctaattacaactatgagcttctt |
32628170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 52 - 332
Target Start/End: Original strand, 32704047 - 32704331
Alignment:
| Q |
52 |
gtagtttttctttgaaaatgtcaagggacttaaatatggtgttgaagtcatttcccggtagatcgttcaaaaatatc----atatattcgggagatttat |
147 |
Q |
| |
|
|||| ||||||||||| |||| |||||| |||||| |||||||||| || || ||||||||||||||||| | | |||||||| |||||||||| |
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|
| T |
32704047 |
gtagattttctttgaacgtgtcgagggacctaaatacattgttgaagtcgttccctggtagatcgttcaaaaagaccttatatatattcaggagatttat |
32704146 |
T |
|
| Q |
148 |
gattaagttttcgacaaagcttttccacaactttgataatatctaagatcaccaacaaagtgtttgatccagaagagcaacctaagtctgcaattgtcaa |
247 |
Q |
| |
|
||||||| | |||||||| |||||||||||| |||||| ||||| ||||| ||||||||||||||| |||| |||||||||| || |||||||||| ||| |
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|
| T |
32704147 |
gattaagctctcgacaaatcttttccacaaccttgatagtatctgagatcgccaacaaagtgtttggtccataagagcaacccaaatctgcaattgccaa |
32704246 |
T |
|
| Q |
248 |
gcttttggagagtgtgttgttgtacatgctggttatggcttcatctctcaaaggttttgtcaaatatattacctttcgctgtata |
332 |
Q |
| |
|
|||| ||| |||||| || ||||||||| | ||||||||||| ||||||||| ||||||||||| | || |||||||||| |||| |
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|
| T |
32704247 |
gcttatggggagtgttttattgtacatgtttgttatggcttcttctctcaaaagttttgtcaaagaaatcacctttcgctatata |
32704331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 70 - 295
Target Start/End: Original strand, 7298000 - 7298225
Alignment:
| Q |
70 |
tgtcaagggacttaaatatggtgttgaagtcatttcccggtagatcgttcaaaaatatcatatattcgggagatttatgattaagttttcgacaaagctt |
169 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||| | | ||| || ||||||||| | || ||||||||| ||| || | || | | |||||||| |
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|
| T |
7298000 |
tgtcaagtgacttaaatatgttgttgaagtcatttccagaaacatcattaaaaaatatcttgtactcgggagatgaatggttcaattgttggcaaagctt |
7298099 |
T |
|
| Q |
170 |
ttccacaactttgataatatctaagatcaccaacaaagtgtttgatccagaagagcaacctaagtctgcaattgtcaagcttttggagagtgtgttgttg |
269 |
Q |
| |
|
|||||||| ||||||||||| | | ||| ||||||||||||| ||||||||| |||||||| |||||||||| | ||||||| | ||||| ||| | |
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|
| T |
7298100 |
ctccacaaccatgataatatctgataccacaaacaaagtgtttggtccagaagaacaacctaaatctgcaattgcaaggcttttgaaaagtgttttggag |
7298199 |
T |
|
| Q |
270 |
tacatgctggttatggcttcatctct |
295 |
Q |
| |
|
|| | ||| ||||||||||||||||| |
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|
| T |
7298200 |
tagaggcttgttatggcttcatctct |
7298225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 93 - 243
Target Start/End: Original strand, 32709802 - 32709952
Alignment:
| Q |
93 |
ttgaagtcatttcccggtagatcgttcaaaaatatcatatattcgggagatttatgattaagttttcgacaaagcttttccacaactttgataatatcta |
192 |
Q |
| |
|
|||||||| || ||||| | ||||||||| || | | | ||||||||||||| |||||| | | |||||||||||||||||| || ||||||| ||| |
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|
| T |
32709802 |
ttgaagtcgttacccggcaaatcgttcaagaagaccttgtattcgggagattcatgattcaactctcgacaaagcttttccacgaccttgataaattctg |
32709901 |
T |
|
| Q |
193 |
agatcaccaacaaagtgtttgatccagaagagcaacctaagtctgcaattg |
243 |
Q |
| |
|
| | ||||||||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
32709902 |
ataccaccaacaaagtgtttggcccagaagagcaacccaagtctgcaattg |
32709952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 143
Target Start/End: Original strand, 7293498 - 7293599
Alignment:
| Q |
42 |
atttcttcaagtagtttttctttgaaaatgtcaagggacttaaatatggtgttgaagtcatttcccggtagatcgttcaaaaatatcatatattcgggag |
141 |
Q |
| |
|
||||| ||||||||||| | ||| || | ||||| |||||||| ||| ||||||||||||| || | |||||||| ||||| ||| | |||||||||| |
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|
| T |
7293498 |
atttcatcaagtagtttatgtttaaagctatcaagtgacttaaaaatgttgttgaagtcattccctgaaagatcgttaaaaaagatcttgtattcgggag |
7293597 |
T |
|
| Q |
142 |
at |
143 |
Q |
| |
|
|| |
|
|
| T |
7293598 |
at |
7293599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 19 - 332
Target Start/End: Original strand, 5811435 - 5811748
Alignment:
| Q |
19 |
agcatggacccatttcagtccccatttcttcaagtagtttttctttgaaaatgtcaagggacttaaatatggtgttgaagtcatttcccggtagatcgtt |
118 |
Q |
| |
|
|||| |||||||||||||| ||||||| | | |||||||||||||||| ||||||||||| |||||| | |||||| |||||||||||||||||||| |
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|
| T |
5811435 |
agcaaggacccatttcagtttccatttcattacgtagtttttctttgaaggtgtcaagggacataaatacgtcgttgaaatcatttcccggtagatcgtt |
5811534 |
T |
|
| Q |
119 |
caaaaatatcatatattcgggagatttatgattaagttttcgacaaagcttttccacaactttgataatatctaagatcaccaacaaagtgtttgatcca |
218 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||| || |||||||||| |||||||||| |||| |
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|
| T |
5811535 |
caaaaagactttatattcgggagatttatgattaagttctcgacaaagcttttcaacaaccttgataatttcagagatcaccaagaaagtgtttggtcca |
5811634 |
T |
|
| Q |
219 |
gaagagcaacctaagtctgcaattgtcaagcttttggagagtgtgttgttgtacatgctggttatggcttcatctctcaaaggttttgtcaaatatatta |
318 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||| | | ||||||||| ||| | |||||||| ||||| |||||||||| |||||||||| | || | |
|
|
| T |
5811635 |
aaagagcaacccaagtctgcaattgccaagcttctaggaagtgtgttgcagtatagactggttatagcttcgtctctcaaagattttgtcaaagaaatca |
5811734 |
T |
|
| Q |
319 |
cctttcgctgtata |
332 |
Q |
| |
|
|||||||||||||| |
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|
| T |
5811735 |
cctttcgctgtata |
5811748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 40 - 332
Target Start/End: Original strand, 27736775 - 27737067
Alignment:
| Q |
40 |
ccatttcttcaagtagtttttctttgaaaatgtcaagggacttaaatatggtgttgaagtcatttcccggtagatcgttcaaaaatatcatatattcggg |
139 |
Q |
| |
|
||||||| ||| ||||||| |||||||| ||||||||||||| |||| | ||||||||||||||||||||||||| |||||||||| ||||||| || |
|
|
| T |
27736775 |
ccatttcatcacgtagtttctctttgaaggtgtcaagggacttgaatacgttgttgaagtcatttcccggtagatcattcaaaaatactttatattcagg |
27736874 |
T |
|
| Q |
140 |
agatttatgattaagttttcgacaaagcttttccacaactttgataatatctaagatcaccaacaaagtgtttgatccagaagagcaacctaagtctgca |
239 |
Q |
| |
|
||||||||||| | | | ||||||| ||||||||| |||||||||| ||| | |||||||||| |||||||| ||| |||||||||| ||||||||| |
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|
| T |
27736875 |
agatttatgatgatgcacttgacaaagtttttccacacctttgataatttctgatatcaccaacatagtgtttggcccaaaagagcaacccaagtctgca |
27736974 |
T |
|
| Q |
240 |
attgtcaagcttttggagagtgtgttgttgtacatgctggttatggcttcatctctcaaaggttttgtcaaatatattacctttcgctgtata |
332 |
Q |
| |
|
|||| ||||||| ||| ||||||||| || | | ||||||| ||||| ||||||||||||||||| ||| | || ||||||||||||||| |
|
|
| T |
27736975 |
attgccaagcttctgggaagtgtgttgcaatataggttggttatagcttcgtctctcaaaggttttgttaaagaaatcacctttcgctgtata |
27737067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 57 - 240
Target Start/End: Complemental strand, 20115983 - 20115800
Alignment:
| Q |
57 |
ttttctttgaaaatgtcaagggacttaaatatggtgttgaagtcatttcccggtagatcgttcaaaaatatcat-atattcgggagatttatgattaagt |
155 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||| ||||| | ||||||||||||| | | ||| |||||| ||||||| |||||| | | |
|
|
| T |
20115983 |
ttttctttgaaggtgtcaagggacttaaatatgccgttgaagtcgtttccggatagatcgttcaaagaga-catcatattcaggagattcatgattcaat |
20115885 |
T |
|
| Q |
156 |
tttcgacaaagcttttccacaactttgataatatctaagatcaccaacaaagtgtttgatccagaagagcaacctaagtctgcaa |
240 |
Q |
| |
|
| | |||||||||||||||||| |||||||| ||| ||||||||||||| ||||||| ||| |||||||||||||||||||||| |
|
|
| T |
20115884 |
tctatacaaagcttttccacaaccttgataatttctgagatcaccaacaaggtgtttggtcctgaagagcaacctaagtctgcaa |
20115800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 54 - 240
Target Start/End: Original strand, 21943673 - 21943859
Alignment:
| Q |
54 |
agtttttctttgaaaatgtcaagggacttaaatatggtgttgaagtcatttcccggtagatcgttcaaaaatatcatatattcgggagatttatgattaa |
153 |
Q |
| |
|
|||||||||||||| | ||||||||| |||||| | ||||||| || ||||| ||||||||||||||||||| | ||||||||||||||| |||||| | |
|
|
| T |
21943673 |
agtttttctttgaaggtctcaagggacctaaatacgttgttgaaatcgtttccgggtagatcgttcaaaaataccttatattcgggagattcatgattca |
21943772 |
T |
|
| Q |
154 |
gttttcgacaaagcttttccacaactttgataatatctaagatcaccaacaaagtgtttgatccagaagagcaacctaagtctgcaa |
240 |
Q |
| |
|
| | ||||||||||||||||||| || ||||| || |||||||||||||||| ||| ||||||||| ||||| |||||||||| |
|
|
| T |
21943773 |
actcttgacaaagcttttccacaacatttataatctccgagatcaccaacaaagtatttagtccagaagaacaacccaagtctgcaa |
21943859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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