View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11942_low_22 (Length: 403)
Name: NF11942_low_22
Description: NF11942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11942_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 11 - 385
Target Start/End: Original strand, 48517209 - 48517586
Alignment:
| Q |
11 |
tgagaggataaagaatggataaagtgtaccttataacgacgacaatgagtgccttta------taggtgtgtgggcatgaattcgccttccaaagtattg |
104 |
Q |
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| T |
48517209 |
tgagaggataaagaatggataaagtgtaccttataacgacgacaatgagtgcctttaaatttataggtgtgtgggcatgaa---gccttccaaagtattg |
48517305 |
T |
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| Q |
105 |
atgggaggctgttatgatcggtgcctatcaatgggtttgacggcgtcggatcaagtaatctgatttaaaatgttattnnnnnnntatcaaacaataattt |
204 |
Q |
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| T |
48517306 |
atgggaggctgttatgatcggtgcccatcaatgggtttgacggcgtcggatcaagtaatctgatttaaaatgttattaaaaaaatatcaaacaataattt |
48517405 |
T |
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| Q |
205 |
gatttgattttgaaatatgattttacatttaaaagtaaacaagaataaaagactaagatgaaaaataaatattctccttattcaaactttaaattcaaag |
304 |
Q |
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| T |
48517406 |
gatttgattttgaaatatgattttacatttaaaagtaaacaagaataaaagactaagatgaaaaataaatactctccttattcaaactttaaattcaaag |
48517505 |
T |
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| Q |
305 |
cactacacataatgaataaccttataattccgctacctaagttgccataataactaaagtcaaagaaactatagcatactt |
385 |
Q |
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| T |
48517506 |
cactacacataatgaataaccttataattccgctacctaagttgccataataactaaagtcaaagaacatataacatactt |
48517586 |
T |
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