View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11942_low_24 (Length: 379)
Name: NF11942_low_24
Description: NF11942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11942_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 19 - 368
Target Start/End: Complemental strand, 25595215 - 25594866
Alignment:
| Q |
19 |
ctttccgctattttaacctcaaattataaaacccaataaaagtttcacaaattaaaaaagaaagtaaccttgtacgggtcgattgttttggcttcggatt |
118 |
Q |
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| T |
25595215 |
ctttccgctattttaacctcaaattataaaacccaataaaagtttcacaaattaaaaaagaaagtaaccttgtacgggtcgattgttttggcttcggatt |
25595116 |
T |
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| Q |
119 |
gtaaaaggaaacacaaggcggcgacggtgacgatcaatgtggtggctgaacgggtcatcgtgacggtgacggaatcaaaactgagaacggtgttttaacg |
218 |
Q |
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| T |
25595115 |
gtaaaaggaaacacaaggcggcgaaggtgacgatcaatgtggtggctgaaagggtcatcgtgacggtgacggaatcgaaactgagaacggtgttttaacg |
25595016 |
T |
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| Q |
219 |
taacggtgacggaattgatcggagtgttcgtgtaaataagttcgcgggaagaatgtctagatgcttcgaggctttatatgctgtcgttgtatgacgtggc |
318 |
Q |
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| T |
25595015 |
taacggtgacggaattgatcggagtgttcgtgtaaataagttcgcgggaagaatgtctagatgcttcgaggctttatatgctgtcgttgtatgacgtggc |
25594916 |
T |
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| Q |
319 |
actttgatgtgtcaccacgcatactgaccaatcatatttcagagtttctt |
368 |
Q |
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| T |
25594915 |
actttgatgtgtcaccacgcatactgaccaatcatatttcagagtttctt |
25594866 |
T |
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