View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11942_low_26 (Length: 344)
Name: NF11942_low_26
Description: NF11942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11942_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 334
Target Start/End: Complemental strand, 32590866 - 32590545
Alignment:
| Q |
19 |
gaatgacagttaactgttattgaggttaattttagaattttggatgggaatgaacaatt----aagggataagagcaattaatttggtctacatgtcatc |
114 |
Q |
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| T |
32590866 |
gaatgacagttaactgttgttgaggttaattttaaaattttggatgggaatgaacaattttcaaagggacaagagcaattaatttggtctacatgtcatc |
32590767 |
T |
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| Q |
115 |
gacatcccaaattctagattatcacaaaattctcatttaatatatctgtc--aaaaagtaaggtaacacaactccttaagcaacaaaatacaaattaaaa |
212 |
Q |
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| T |
32590766 |
gacatcccaaattctagattatctaaaaattctcatttaatatatttgtcgaaaaaagtaaggtaacacaactccttaagcaacaaaatacaaattaaaa |
32590667 |
T |
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| Q |
213 |
agattcaaaaagtcaaatgtttttgtccaaattttggactagaaacattgaacnnnnnnnnnnnnctctccacatatttaattaccgatggagtattaaa |
312 |
Q |
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| T |
32590666 |
agattcaaaaagtcaaatgtttttgtccagattttggactagaaacattgaacttttttatttttctctccacatatttaattaccgatggagtattaaa |
32590567 |
T |
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| Q |
313 |
ctgtccaaattttagacctatg |
334 |
Q |
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|||||||||||||||||||||| |
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| T |
32590566 |
ctgtccaaattttagacctatg |
32590545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 161
Target Start/End: Complemental strand, 32594878 - 32594844
Alignment:
| Q |
127 |
tctagattatcacaaaattctcatttaatatatct |
161 |
Q |
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|||||| |||||||||||||||||||||||||||| |
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| T |
32594878 |
tctagagtatcacaaaattctcatttaatatatct |
32594844 |
T |
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