View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11942_low_34 (Length: 299)
Name: NF11942_low_34
Description: NF11942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11942_low_34 |
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| [»] chr1 (7 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-141; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 11 - 299
Target Start/End: Original strand, 2007667 - 2007955
Alignment:
| Q |
11 |
cagagactcgtgtatcttctttttcatctttatcaatcaatacaatatgattttcagagtataaaatatactttttatttttcctatgtgtacaaacctt |
110 |
Q |
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| T |
2007667 |
cagagactcatgtatcttctttttcatctttatcaatcaatacaatatgatttacagagtataaaatatactttttatttttcctatgtatacaaacctt |
2007766 |
T |
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| Q |
111 |
ccccctttgatttatagatttgtaacaattgcatgtaggcaaaacatgagaagaatactgtcgttttagcacccgcctccttttgctgggaagatatctt |
210 |
Q |
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| T |
2007767 |
ccccctttgatttatagatttgtaacaattgcatgtaggcaaaacatgagaagaaaactatcgttttagcacccgccttcttttgctgggaagatatctt |
2007866 |
T |
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| Q |
211 |
tctggagccatccatgctcacccgaatgcgacatgtgcggattgaaggcatctctggcatcaaatctgaattagattttatgagatttc |
299 |
Q |
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| T |
2007867 |
tctggagccatccatgctcacccgagtgcgacatgtagggattgaaggcatctctggcatcaaatctgaattagattttatgagatttc |
2007955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 118 - 299
Target Start/End: Original strand, 2020911 - 2021092
Alignment:
| Q |
118 |
tgatttatagatttgtaacaattgcatgtaggcaaaacatgagaagaatactgtcgttttagcacccgcctccttttgctgggaagatatctttctggag |
217 |
Q |
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| T |
2020911 |
tgatttatggatttggcacaatttcatgtaggcagcacaggaggagaatacggtcgttttagcacctgcctcctattgttgggaaaatgtctttttggag |
2021010 |
T |
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| Q |
218 |
ccatccatgctcacccgaatgcgacatgtgcggattgaaggcatctctggcatcaaatctgaattagattttatgagatttc |
299 |
Q |
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| T |
2021011 |
ccatccatacccatccaagtgtgacatgtgtgtattgaaggcatctctggtatgaaagctgaattagattttttgagatttc |
2021092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 128 - 299
Target Start/End: Complemental strand, 3217379 - 3217208
Alignment:
| Q |
128 |
atttgtaacaattgcatgtaggcaaaacatgagaagaatactgtcgttttagcacccgcctccttttgctgggaagatatctttctggagccatccatgc |
227 |
Q |
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| T |
3217379 |
atttgtaaaaatcgaatgtaggcaaagcttgagaaacatactgaccttttaacacccgcctcctattgttggaaagatgtctttttggagccacccgtgc |
3217280 |
T |
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| Q |
228 |
tcacccgaatgcgacatgtgcggattgaaggcatctctggcatcaaatctgaattagattttatgagatttc |
299 |
Q |
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| T |
3217279 |
ccctccgagtgcgccatgtgagcataaaaggaatctctgacaatacatctgaattagattttatcagatttc |
3217208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 75 - 151
Target Start/End: Original strand, 1793867 - 1793943
Alignment:
| Q |
75 |
aatatactttttatttttcctatgtgtacaaaccttccccctttgatttatagatttgtaacaattgcatgtaggca |
151 |
Q |
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| T |
1793867 |
aatatactttttatctgtcctttttgtacgaacctcccccctttgatttttggatttgtaacaattgtgtgtaggca |
1793943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 299
Target Start/End: Original strand, 3364016 - 3364078
Alignment:
| Q |
237 |
tgcgacatgtgcggattgaaggcatctctggcatcaaatctgaattagattttatgagatttc |
299 |
Q |
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| T |
3364016 |
tgcgacatgtgaggatgcatggcatctctggctttaaatctgaattagattttatcagatttc |
3364078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 299
Target Start/End: Complemental strand, 2947282 - 2947239
Alignment:
| Q |
256 |
aggcatctctggcatcaaatctgaattagattttatgagatttc |
299 |
Q |
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| T |
2947282 |
aggcatttctggtatcaaatctgaattagattttatcagatttc |
2947239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 299
Target Start/End: Original strand, 3353406 - 3353449
Alignment:
| Q |
256 |
aggcatctctggcatcaaatctgaattagattttatgagatttc |
299 |
Q |
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| T |
3353406 |
aggcatttctggtatcaaatctgaattagattttatcagatttc |
3353449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 128 - 299
Target Start/End: Original strand, 20924420 - 20924591
Alignment:
| Q |
128 |
atttgtaacaattgcatgtaggcaaaacatgagaagaatactgtcgttttagcacccgcctccttttgctgggaagatatctttctggagccatccatgc |
227 |
Q |
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| T |
20924420 |
atttgtaacaattgcatgtaggcacgacttaaggaggagacagaccttttaacacacacctcctattgttgggaagatatcttttcggagccagatatgc |
20924519 |
T |
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| Q |
228 |
tcacccgaatgcgacatgtgcggattgaaggcatctctggcatcaaatctgaattagattttatgagatttc |
299 |
Q |
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| T |
20924520 |
tcctcaaattgcaacatgtggagatacaagacatctctggtaccaaatctgaattagattttatcagatttc |
20924591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 291
Target Start/End: Original strand, 39275301 - 39275335
Alignment:
| Q |
257 |
ggcatctctggcatcaaatctgaattagattttat |
291 |
Q |
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| T |
39275301 |
ggcatcgctggcatcaaatctgaattagattttat |
39275335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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