View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11942_low_35 (Length: 296)
Name: NF11942_low_35
Description: NF11942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11942_low_35 |
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| [»] chr4 (7 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 21 - 296
Target Start/End: Original strand, 26097207 - 26097482
Alignment:
| Q |
21 |
ataatctctcgtttaactgcgattttctctaatatctttgccaatcttgggttcacggattcatcaggagcaacattaggattggttcttattgccttga |
120 |
Q |
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| T |
26097207 |
ataatctctcgtttaactgcgattttctctaatatctttgccaatcttgggttcacggattcatcaggagcaacattaggactggttcttattgccttga |
26097306 |
T |
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| Q |
121 |
cagtaccaaaaggtccagctttttcctctttaactgatgcaatatggtctttcccttgctctgcaagccgaagcctttccgtcatctccctcaactgttt |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26097307 |
cagtaccaaaaggtccagctttttcctctttaactgatgcaatatggtctttcccttgctctgcaagccgaagcctttccgtcatctccctcaactgttt |
26097406 |
T |
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| Q |
221 |
tttcagctctgcatttttatctgataagagtgccacaaattctgattttaacatgttaactctatctgatgattca |
296 |
Q |
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| T |
26097407 |
tttcagctctgcatttttatctgataacagtgccacaaattctgattttaacatgttaactctatctgatgattca |
26097482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 24 - 233
Target Start/End: Original strand, 26127154 - 26127363
Alignment:
| Q |
24 |
atctctcgtttaactgcgattttctctaatatctttgccaatcttgggttcacggattcatcaggagcaacattaggattggttcttattgccttgacag |
123 |
Q |
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| T |
26127154 |
atctctcggtttactgcaattttctctaataaatttgccaatctcgggttcacggattcatcaggagcaacattaggattggttcttaatgccttgacag |
26127253 |
T |
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| Q |
124 |
taccaaaaggtccagctttttcctctttaactgatgcaatatggtctttcccttgctctgcaagccgaagcctttccgtcatctccctcaactgtttttt |
223 |
Q |
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| T |
26127254 |
taccaaaaggtccagctttttcctctttaactgatgcaatatggtctttcccttgctctgcaagccgaagcctttccctcaactccctcaactgtttttt |
26127353 |
T |
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| Q |
224 |
cagctctgca |
233 |
Q |
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||||||||| |
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| T |
26127354 |
tagctctgca |
26127363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 24 - 296
Target Start/End: Original strand, 26065210 - 26065497
Alignment:
| Q |
24 |
atctctcgtttaactgcgattttctctaatatctttgccaatcttgggttcacggattcatcaggagcaacattaggattggttcttattgccttgacag |
123 |
Q |
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|||||| |||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
26065210 |
atctcttgtttaactgcgattttatctaatatatttgccaatctcgggttcacggattcatcaggagcaacattaggattggttcttaatgccttgacag |
26065309 |
T |
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| Q |
124 |
taccaaaaggtccagctttttcctctttaactgatgcaa---------------tatggtctttcccttgctctgcaagccgaagcctttccgtcatctc |
208 |
Q |
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|||||||||||||||||||||||| |||| || |||||| |||||||| ||||||||||||||| ||||||||||||||| ||| |
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| T |
26065310 |
taccaaaaggtccagctttttcctgtttacctaatgcaagcaacattttttctgcctggtcttttccttgctctgcaagctgaagcctttccgtcaactc |
26065409 |
T |
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| Q |
209 |
cctcaactgttttttcagctctgcatttttatctgataagagtgccacaaattctgattttaacatgttaactctatctgatgattca |
296 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
26065410 |
actcacttgttttttcagctctgcatttttatctgataagagcgccacaaattctgattttaacatgttaactttatctgatgattca |
26065497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 24 - 257
Target Start/End: Original strand, 26120497 - 26120745
Alignment:
| Q |
24 |
atctctcgtttaactgcgattttctctaatatctttgccaatcttgggttcacggattcatcaggagcaacattaggattggttcttattgccttgacag |
123 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
26120497 |
atctctcgtttaactgcgattttctctaataaatttgccaatctcgggttcacggattcatcaggagcaacaataggattggttcttaatgccttgacag |
26120596 |
T |
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| Q |
124 |
taccaaaaggtccagctttttcctctttaactgatgcaa---------------tatggtctttcccttgctctgcaagccgaagcctttccgtcatctc |
208 |
Q |
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|||||||||||||||||||||||| ||||||| |||||| | |||||||||||||||||||||| ||||||||||||||||| ||| |
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| T |
26120597 |
taccaaaaggtccagctttttcctgtttaactaatgcaagaaactctttttctgtctggtctttcccttgctctgcaatccgaagcctttccgtcaactc |
26120696 |
T |
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| Q |
209 |
cctcaactgttttttcagctctgcatttttatctgataagagtgccaca |
257 |
Q |
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| T |
26120697 |
cctcaactgtttttttagctctgcatttttatctgataaaagtgccaca |
26120745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 24 - 296
Target Start/End: Original strand, 26036562 - 26036846
Alignment:
| Q |
24 |
atctctcgtttaactgcgattttctctaatatctttgccaatcttgggttcacggattcatcaggagcaacattaggattggttcttattgccttgacag |
123 |
Q |
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|||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||| | ||||||||| |
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| T |
26036562 |
atctctcgtttaactgagattttctccaatatctttgccaatcttggattcacggattcatcaggaacaacagtaggattggttcttaatcccttgacag |
26036661 |
T |
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| Q |
124 |
taccaaaaggtccagctttttcctctttaactgatgcaata---------------tggtctttcccttgctctgcaagccgaagcctttccgtcatctc |
208 |
Q |
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| T |
26036662 |
taccaaaaggtccagctttttcttgtttacctaatgcaagaaattgtttttgagcctggtctttcccttgctctgcaagccgaagcctttctgtcaactc |
26036761 |
T |
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| Q |
209 |
cctcaactgttttttcagctctgcatttttatctgataagagtgccacaaattctgattttaacatgttaactctatctgatgattca |
296 |
Q |
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||||| ||||||||||||||| || ||||| |||||| | ||||||||| |||||||| |||||||| |||||||||||||||||| |
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| T |
26036762 |
cctcacctgttttttcagctcagcgtttttgtctgat---actgccacaaactctgatttcaacatgttgactctatctgatgattca |
26036846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 24 - 152
Target Start/End: Original strand, 26084935 - 26085063
Alignment:
| Q |
24 |
atctctcgtttaactgcgattttctctaatatctttgccaatcttgggttcacggattcatcaggagcaacattaggattggttcttattgccttgacag |
123 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||| ||||||| | ||||||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
26084935 |
atctctcgtttaactgcgattttctctaataaatttgccaatctcgggttcaagaattcatcaggagcaacagtaggattggttcttaatgccttgacag |
26085034 |
T |
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| Q |
124 |
taccaaaaggtccagctttttcctcttta |
152 |
Q |
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|||||||||||||||||||||||| |||| |
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| T |
26085035 |
taccaaaaggtccagctttttcctgttta |
26085063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 197 - 296
Target Start/End: Original strand, 26085102 - 26085201
Alignment:
| Q |
197 |
ttccgtcatctccctcaactgttttttcagctctgcatttttatctgataagagtgccacaaattctgattttaacatgttaactctatctgatgattca |
296 |
Q |
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| T |
26085102 |
ttccgtcaactccctcacctgttttttcagctctgcatttttatctgataagagtgccacaaattctgattttaacatgttaactctatctgatgattca |
26085201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 139
Target Start/End: Original strand, 6773916 - 6773998
Alignment:
| Q |
57 |
tttgccaatcttgggttcacggattcatcaggagcaacattaggattggttcttattgccttgacagtaccaaaaggtccagc |
139 |
Q |
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||||||||||| |||||||| || ||||| ||| |||| |||||| ||||| | |||||||||||||||||||| ||||| |
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| T |
6773916 |
tttgccaatctagggttcactgactcatcgggaataacagaaggatttgttctgagagccttgacagtaccaaaaggaccagc |
6773998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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