View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11942_low_38 (Length: 255)
Name: NF11942_low_38
Description: NF11942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11942_low_38 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 30698981 - 30698727
Alignment:
| Q |
1 |
ctaaacagaaacctctttcttcctaatgcatatgatgactagctcttacttcaataacccagatttggaaatgttgcaacaagatcctactaatattctc |
100 |
Q |
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| T |
30698981 |
ctaaacagaaaccactttcttcctaatgcatatgatgagtagctcttacttcaataacccagatttggaaatgttgcaacaagatcctactaatattctc |
30698882 |
T |
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| Q |
101 |
tttgaaccatttcatcatgaccctaatattcatgattatctttcctttgacatggttgaccaacaaggaccaacaaaaaatgaaccaaatcatgaactag |
200 |
Q |
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| T |
30698881 |
tttgaaccatttcatcatgaccctaatattcatgattatctttcctttgacatggttgaccaacaaggaccaacaaaaaatgaaccaaatcatgaactag |
30698782 |
T |
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| Q |
201 |
tgaagaactttcaaactagagaagaaagatcatatataggtgtgaggaacagacc |
255 |
Q |
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| T |
30698781 |
tgaagaactttcaaactaaagaagaaagatcatatataggtgtgaggaagagacc |
30698727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 24 - 255
Target Start/End: Complemental strand, 30719112 - 30718884
Alignment:
| Q |
24 |
taatgcatatgatgactagctcttacttcaataacccagatttggaaatgttgcaacaagatcctactaatattctctttgaaccatttcatcatgaccc |
123 |
Q |
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| T |
30719112 |
taatgcatacgatgagtagctcttttttccataacccagatttggaaatgttgcagcaagatcttactaatattctgtttgaaccatttcatcaagaccc |
30719013 |
T |
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| Q |
124 |
taatattcatgattatctttcctttgacatggttgaccaacaaggaccaacaaaaaatgaaccaaatcatgaactagtgaagaactttcaaactagagaa |
223 |
Q |
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| T |
30719012 |
ttatattcatgattatctttctttttacatggttgaccaacaaggaccaaacaaaaacgaaccaaataat---tcaatgaataattctgaacctaaagaa |
30718916 |
T |
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| Q |
224 |
gaaagatcatatataggtgtgaggaacagacc |
255 |
Q |
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| T |
30718915 |
gaaagatcatatataggtgtgaggaagagacc |
30718884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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